1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgtgtttcatagatatcacaagtttgtatttgtttccaactttcttgttgttccttttgtcagacagaaatgttcttaggatattttttctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGGT
species | Zea mays |
transcript | GRMZM2G048150_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
genomic: AAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
ttgttgttccttttgtcagacagaaatgttcttaggatattttttctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGGT
tattttttcttt CT-rich tract
atattttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgtttcatagatatcacaagtttgtatttgtttccaactttcttgttgttccttttgtcagacagaaatgttcttaggatattttttctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGGT
-tgtgttt
- - - - - - - -atcacaa
- - - - - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaaa