1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acttcgacacatgcattcgcatgctctatatatcaattatttgtgccccatctcttggtttaatcaccaccacagccacttgataattacttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATGGAGAGGCTGAAAATCGAGCTAAAGCCGAGAGAGAATCGTGGGGCGAAA
species | Zea mays |
transcript | GRMZM2G047860_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|60342892|gb|DN209865.1|DN209865
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|37400289|gb|CF637495.1|CF637495
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: TATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|33094100|gb|CF054094.1|CF054094
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|32917049|gb|CF021861.1|CF021861
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAGGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|211053628|gb|FL481081.1|FL481081
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: ATATA-TGAACAAAACGGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCARGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|33103180|gb|CF063140.1|CF063140
genomic: ATATATTGAACAAAAC-GGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|32933985|gb|CF038797.1|CF038797
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAGAGCGGTTGAACTTGGAGGATEST: gi|33104168|gb|CF064128.1|CF064128
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|47961761|gb|CN844470.1|CN844470
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAEST: gi|32933645|gb|CF038457.1|CF038457
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACA
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|94472096|gb|EB701054.1|EB701054
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|116828198|gb|EC855483.1|EC855483
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGA-CAGAAGCATTTGAGAAGCTCATCAGCAAG TC-NCGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|76014693|gb|DT941863.1|DT941863
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|86465815|gb|DY232188.1|DY232188
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATEST: gi|24767007|gb|CA402152.1|CA402152
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
EST: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAG TCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
genomic: GATATATTGAACAAAACGGACCAGAAGCATTTGAGAAGCTCATCAGCAAGgtactcttgt ... ttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGAT
ccccatctcttggtttaatcaccaccacagccacttgataattacttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATGGAGAGGCTGAAAATCGAGCTAAAGCCGAGAGAGAATCGTGGGGCGAAA
acttaat putative branch site (score: 4)
ttgataattacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttcgacacatgcattcgcatgctctatatatcaattatttgtgccccatctcttggtttaatcaccaccacagccacttgataattacttaattgcagTCTACGAAGTCTTCGAAGTCAAGGAACACAAAGCGGTTGAACTTGGAGGATGGAGAGGCTGAAAATCGAGCTAAAGCCGAGAGAGAATCGTGGGGCGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - cgacaca
- - - - - -tgcattc
- - - - - - - - - gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagccac