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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacacttgtgaacttaaattccgtgttattatatgtactagtcttagccttccttgtgactgtttgtattgcagGATGAAGCTGGGACTGCAGCCATCAAGACAGTTGAACTTGATGCCATCCTTGGGGGTCGTGCAATTCAACATAGGGAACTCCAAGGTTACGAATCTGACA

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047310_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 3
------------gtacacacttgtgaa---cttaaattccgtgttattatatgtact-------agtcttagccttccttgtgactgtttgtattgc-agGATGAAGCTGGGACTGCAGCCATCAAGACAGTTGAACTTGATGCCATCCTTGGGGGTCGTGCAATTCAACATAGGGAACTCCAAGGTTACGAATCTGACA
              |   | |||  ||   |     ||  | |   | |||  | ||       | |  ||  |||   ||  |||| || || | | ||||||| ||||| ||||||||||| || || ||||||||||||||    ||||| || |||||| | || || |||||| |||||||  | || || ||||
atttagatgtgttgagttatttggaaagggcaggggttaggagggttcatagttgctttgacaaaataataatcttggctgacactgattttacttctagGATGAGGCTGGAACTGCAGCCATTAAAACTGTTGAACTTGATGCTGCTCTTGGAGGGCGTGCAGTGCAGCACAGGGAAATCCAAGGACATGAGTCCGACA

upper sequence: GRMZM2G047310_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 3'ss of exon 5
gtacacacttgtgaacttaa-attccgtgtta--ttatatgtactagtc-ttagccttccttgtgactgtttgt--attgcagGATGAAGCTGGGACTGCAGCCATCAAGACAGTTGAACTTGATGCCATCCTTGGGGGTCGTGCAATTCAACATAGGGAACTCCAAGGTTACGAATCTGACA
|||   | || ||  | | | |     | |||  || ||  |   | || | |   || ||  |    | |||   ||| |||||||||||||| || |||||  ||||||||||||||||||||||    ||||| || || ||  | ||| || | ||| | |||||| | ||||||||||
gtatttatttttgggcatgatagcatatattacgttctaaatttgaatcgtcattattactaatctgcgattgataattccagGATGAAGCTGGAACAGCAGCTGTCAAGACAGTTGAACTTGATGCAGCTCTTGGAGGCCGAGCTGTCCAATATCGTGAAATTCAAGGTCATGAATCTGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgtgttattatatgtactagtcttagccttccttgtgactgtttgtattgcagGATGAAGCTGGGACTGCAGCCATCAAGACAGTTGAACTTGATGCCATCCTTGGGGGTCGTGCAATTCAACATAGGGAACTCCAAGGTTACGAATCTGACA
      ttattatatgtacta  TA-rich tract