1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtactctctgtctctcttctgtatctctctgtgtgtgtgagagagagagacagagagattctgcacgtacgttctctgactccgctgcgattctgcgatgcgatgcgatgcgatgcagGGTGTTCTGGACTGAGGCGGCGGCGAACGCCGTGGTTGTGGAGGCCGACGCGTTCAAGGAGTCGGACGTGATCTACCAAGCCATCAGCTCGCGGGGCCAC
species | Zea mays |
transcript | GRMZM2G047262_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTGGCATGGGTGCTGGCAAGAGCACCGTGCTCAAGCAAATCATGAAGGA GGTGTTCTGGACTGAGGCGGCGGCGAACGCCGTGGTTGTGGAGGCCGACGCEST: gi|211459766|gb|FL096410.1|FL096410
genomic: GGTGGCATGGGTGCTGGCAAGAGCACCGTGCTCAAGCAAATCATGAAGGAgtgagtactc ... tgcgatgcagGGTGTTCTGGACTGAGGCGGCGGCGAACGCCGTGGTTGTGGAGGCCGACGC
EST: GTTGGCATGGGTGCTGGCAAGAGCACCGTGCTCAAGCAAATCATGAAGGA GGTGTTCTGGACTGAGGCGGCGGCGAACGCCGTGGTTGTGGAGGCCGAC
genomic: GGTGGCATGGGTGCTGGCAAGAGCACCGTGCTCAAGCAAATCATGAAGGAgtgagtactc ... tgcgatgcagGGTGTTCTGGACTGAGGCGGCGGCGAACGCCGTGGTTGTGGAGGCCGAC
cacgtacgttctctgactccgctgcgattctgcgatgcgatgcgatgcgatgcagGGTGTTCTGGACTGAGGCGGCGGCGAACGCCGTGGTTGTGGAGGCCGACGCGTTCAAGGAGTCGGACGTGATCTACCAAGCCATCAGCTCGCGGGGCCAC
ctctgac putative branch site (score: 56)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtactctctgtctctcttctgtatctctctgtgtgtgtgagagagagagacagagagattctgcacgtacgttctctgactccgctgcgattctgcgatgcgatgcgatgcgatgcagGGTGTTCTGGACTGAGGCGGCGGCGAACGCCGTGGTTGTGGAGGCCGACGCGTTCAAGGAGTCGGACGTGATCTACCAAGCCATCAGCTCGCGGGGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC