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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atccttctaaaatgtataatgcttatctagacttcagttcttattttaagaacagaattttctttgccctctaatattttatttttcatcttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTGTCGTTAAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCGGTTGCTC

Basic information

species Zea mays
transcript GRMZM2G047093_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047093_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g43030.1 (Oryza sativa), 3'ss of exon 4
--atccttctaaaatgtataatgcttatctagacttcagttcttattttaagaacagaattttctttgccctctaatattttatttttcatcttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTGTCGTTAAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCGGTTGCTC
  ||  || |    | | |  | ||    |    |||   | |   |  ||| | | | | || | |    |||||||  | ||| |   | | || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |  | ||||||||||||||||||||||||||||||||||| || ||||
caattattgttcttttt-tgttactagcatcattttccagtgt-gctacaagcagaaagtgttttgtttattctaataaatgattctatctttattccacagGCACAAATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTAACACTGAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCTGTAGCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146407|gb|FL424906.1|FL424906
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|32930286|gb|CF035098.1|CF035098
EST:     CGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: CGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211081604|gb|FL369109.1|FL369109
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|18384963|gb|BM418162.1|BM418162
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211307138|gb|FL392844.1|FL392844
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211245310|gb|FL400476.1|FL400476
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|18383999|gb|BM417199.1|BM417199
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211087316|gb|FL378414.1|FL378414
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211351636|gb|FL428918.1|FL428918
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211202659|gb|FL427925.1|FL427925
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGNCTGGCTTTGTTGAGACTANGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211298871|gb|FL392442.1|FL392442
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTACAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211434149|gb|FL401078.1|FL401078
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211351633|gb|FL428915.1|FL428915
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211144252|gb|FL374571.1|FL374571
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGGACTTGTCTGGGCTTTGTTGAGACTAGGCAACAACTTT
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGG-ACTTGTCTGG-CTTTGTTGAGACTAGGCAACAACTTT
EST: gi|18654934|gb|BM499739.1|BM499739
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|76013182|gb|DT940352.1|DT940352
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|18963330|gb|BM660374.1|BM660374
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|32933101|gb|CF037913.1|CF037913
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211039363|gb|FL382061.1|FL382061
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211065683|gb|FL394004.1|FL394004
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211204324|gb|FL385639.1|FL385639
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTANGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211156640|gb|FL401280.1|FL401280
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211166060|gb|FL381601.1|FL381601
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211303363|gb|FL404498.1|FL404498
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211517987|gb|FL372292.1|FL372292
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211112730|gb|FL370881.1|FL370881
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211461654|gb|FL410743.1|FL410743
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAAGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211506957|gb|FL409457.1|FL409457
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|32943122|gb|CF047941.1|CF047941
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211339025|gb|FL403590.1|FL403590
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|19855106|gb|BQ060158.1|BQ060158
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211184480|gb|FL377621.1|FL377621
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211095044|gb|FL395908.1|FL395908
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211298413|gb|FL370612.1|FL370612
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211324007|gb|FL416239.1|FL416239
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211037251|gb|FL404714.1|FL404714
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211493470|gb|FL389418.1|FL389418
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211223503|gb|FL389609.1|FL389609
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|33095320|gb|CF055314.1|CF055314
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211040054|gb|FL419095.1|FL419095
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211063544|gb|FL410481.1|FL410481
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211002643|gb|FL371723.1|FL371723
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211366005|gb|FL393803.1|FL393803
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTG
EST: gi|211169425|gb|FL381638.1|FL381638
EST:     GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTG
EST: gi|211194169|gb|FL382173.1|FL382173
EST:     GGATTGATCCAGATAACATANAAATTCTTCGTGACTTGTCCCTTCTCCAG                         GCACAGATGAGGGACTTG
genomic: GGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 158

GTCAGATAGAGAATACAGAGAAGCTATAAAATGTTACAGAAATGCATTGAGGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTGTCGTTAAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCGGTTGCTC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 278

GTCAGATAGAGAATACAGAGAAGCTATAAAATGTTACAGAAATGCATTGAGGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTGTCGTTAAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCGGTTGCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 164

GTCAGATAGAGAATACAGAGAAGCTATAAAATGTTACAGAAATGCATTGAGGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTGTCGTTAAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCGGTTGCTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 165

GTCAGATAGAGAATACAGAGAAGCTATAAAATGTTACAGAAATGCATTGAGGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGgttggcgtaa ... ttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTGTCGTTAAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCGGTTGCTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagaacagaattttctttgccctctaatattttatttttcatcttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTGTCGTTAAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCGGTTGCTC
                       ctctaat  putative branch site (score: 165)
                               ttttatttttcatctt  CT-rich tract
                        tctaatattttatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atccttctaaaatgtataatgcttatctagacttcagttcttattttaagaacagaattttctttgccctctaatattttatttttcatcttttacacagGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCAACAACTTTTGTCGTTAAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCGGTTGCTC

- - - - - - - - - atgctta
- - - - - - - - - - - - - - - - - - - - - - - -aagaaca