1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgggtagtttccacttgtttctggtctatgttggctttattttacccttctattatcctgatagtttggatgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATT
species | Zea mays |
transcript | GRMZM2G045366_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGNCA-CTTATACGTCATCCAAEST: gi|148965331|gb|EE016133.2|EE016133
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTG-CAACTTATACGTCATCCAA
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAAEST: gi|76291780|gb|DV031348.1|DV031348
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAA
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAAEST: gi|76288739|gb|DV028307.1|DV028307
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAA
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAAEST: gi|71307030|gb|DR789669.1|DR789669
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAA
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTEST: gi|71448903|gb|DR829953.1|DR829953
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGT
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAAEST: gi|149075835|gb|EE164377.2|EE164377
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAA
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACEST: gi|71441712|gb|DR822762.1|DR822762
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATAC
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGNCA-CTTATACGTCATCCAAEST: gi|78111238|gb|DV529635.1|DV529635
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTG-CAACTTATACGTCATCCAA
EST: TGCTGTTAAGAAGCTGGACGATGATCTAATTTGCG-ACGGGCAGCAA-GT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCACCTTATACGTCATCCAAEST: gi|93284065|gb|EB676329.1|EB676329
genomic: TGCTGTTAAGAAGCTGGACGATGATCTAATT-GCGGACGG-CAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAA
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAAEST: gi|78080255|gb|DV508667.1|DV508667
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAA
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAAEST: gi|76287394|gb|DV026962.1|DV026962
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAA
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAAEST: gi|76291270|gb|DV030838.1|DV030838
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAA
EST: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGT GCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAA
genomic: GTTGCTGTTAAGAAGCTGGACGATGATCTAATTGCGGACGGCAGCAAAGTgtgggtagtt ... tgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAA
ctatgttggctttattttacccttctattatcctgatagtttggatgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATT
tcctgat putative branch site (score: 79)
tttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtagtttccacttgtttctggtctatgttggctttattttacccttctattatcctgatagtttggatgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA