Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgcgctgagcgtgtgatatgatgcactagtcgattgatcgcctgcttgcgctatgtccagcagatcgtgtatatggccgtaccaaacattaattgatggacgacaatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT

Basic information

species Zea mays
transcript GRMZM2G045057_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatatatgcgctgagcgtgtgatatgatgcactagtcgattgatcgcctgcttgcgctatgtccagcagatcgtgtatatggccgtaccaaacattaattgatggacgacaatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT
                    | |||     ||| | ||   |  |        |  | |||   ||     || ||  ||| |  ||   | | ||| |||  |        |||  | |||  || | |||||  ||||| || |||| ||  |||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| || ||||| ||
----------------gtcattataattaacacaaatcttgttttgattattataagatatagacatatagtcctggttattgttgtttaatatatttatttttcat-----ataaaaaagGCTGAGGATGTGAAACACTCTGGTCCAACCACAATGGTGCTTTACTTCACCGGAGCCACCAACATTCTCTACACCTTTGGTGGCCACGCCGTCACAGT

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv18s0001g03540.t01 (Vitis vinifera), 3'ss of exon 4
--gtatatatgcgctgagcgtgtgatatgatgcactagtcgattgatcgcctgcttgcgctatgtccagcagatcgt--gtatatggccgtaccaaacat-taat----tgatggacgacaatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT
   | ||| | |  | |     ||   | ||    ||||       ||   |  || |  ||   ||| |    | |   || || |   ||   |  |  ||||    || ||     |    ||  |||| || || |||| |||||| ||||||| ||| ||||| ||||||||||| || || |||||||| |||||||||||||| || ||||||||||| ||
gtatgtatttaccttaattagctgtattcatcacttagttttaatttcaaataattcccataatcccatcccccctttgatacattgatttatttattaagtaatcccatgctgatttgcttgtttgaagGTTGAGGGGGTGAAGCACTCTGGCCCAACCAAAATGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTACACCTTTGGTGGTCATGCTGTCACAGT

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S213_89V6.1 (Physcomitrella patens), 3'ss of exon 4
gtatatatgcgct-gagcgtgtgatatgatgcac-tagtcgattgatcgcctg-cttgcgctatgtccag-cagatcgtgtatatggccgtaccaaacattaattgatggacgacaatattat--agGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT
   || |  |  |  | | |  ||   ||  | | |  || |    |  | |  |||||  |    |  | | | |  | |||| |   |    |  | ||  |  ||    ||  || || |  ||      || || ||||||   |||||      || |||  | |||||||| || || |||||||| ||||||||||||||| |||| ||||| || ||
--gtaaaaccattcaaactttagaaccgactcgcatcctcaaccactttcttaacttgcagttgaactggtcgggtgatttata-gattgatagattccttcctgcattcctgaatatgttttccagACCTCTGGCGTAACGCACAATGGCCCCGTGTCGAGGGTTTTATACTTCACGGGAGCAACCAACATTCTCTACACCTTTGGAAGCCACGCTGTGACAGT

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ34222 (Selaginella moellendorffii), 3'ss of exon 4
gtatatatgcgctgagcgtgtgatatgatgcactagtcgattgatcgcctgcttgcgctatgtccagcagatcgtgtatatggccgtaccaaacattaattgatggacgacaatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT
                 ||||||   || | |   |       || |  | | || ||| |||| |  |   || |        ||  |       ||||   | |       |   ||||| |||   ||| | |||| | ||  | |||||  |||||||||||||||| || ||||| ||||| ||||| || |||||||||||||| || |||||
-----------------gtgtgagtggagggaggggggcgagtatagttt-cgtgagctctgtc-actatcacgagagctctttcgatctt--tgctaatctcttggaactcctgccatagGCGGACAATGTCAAGCACACTGGAGCGAGCAAACTGGTGCTCTACTTCACTGGAGCCACAAACATACTCTATACATTTGGAGGCCATGCGGTGACTGT

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ18760 (Selaginella moellendorffii), 3'ss of exon 4
------------------------------------------------------------gtatatatgcgctgagcgtgtgatatgatgcactagtcgattg-atcgcctgct--tgcgctatgtccagcagatcgtgtatatggccgta-ccaaacat---taattgatggacgacaatattatagGTGGA---AGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT
                                                            ||| |  |    | | | |    | |  |   ||  |    |  |||    | |  |     ||       | |     | ||| | |||   | |||||   |||||     ||  |   | | | |  |||   |||||| | ||| |||| |||||  ||  | || |  || ||||| || |||||||||||| | ||||||||||| |||||||| ||||||||
gtgagagaagcatctaaaaaagctccactggatgataagcttgtctcgtcaaagtttgctgtagaactagaattatctttcattttcttttgctgctttgctacatcatgagatgatagaggatagattttaaacttcttgtataggcgtggtctaacatgaataattctcacacttcttcacttttgcagGACCCAGGTGTAAAGCATTCGGCCCCAAATAATCTCGTCCAATATTTCACTGGAGCCACCAACATCTTGTACACCTTTGGTGGCCATGCCGTCACTGT

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ36050 (Selaginella moellendorffii), 3'ss of exon 4
---------------------------gtatat-atgcgctgagcgtgtgata---tgatgcactagtcgattgatcgcctgcttgcgctatgtccagc---agatcgtgtatatggccgta-ccaaacat---taattgatggacgacaatattatagGTGGA---AGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT
                            |  || ||  |||   |  || | |   || || |  | | || | |||      ||    |  |         | |     || || | |||   | |||||   |||||     ||  |   | | | |  |||   |||||| | ||| |||| |||||  ||  | || |  || ||||| || |||||||||||| | ||||||||||| || ||||| ||||||||
gtgagagaagcatctaaaaaagctccactggatgataagcttgtctcgtcaaagtttgctgtagaactagaattatctttcatttatcatgggatagattttaaacttcttacataggcgtggtctaacatcaataattctcacacttcttcacttttgcagGACCCAGGTGTAAAGCATTCGGCCCCAAATAATCTCGTCCAATATTTCACTGGAGCCACCAACATCTTGTACACCTTTGGTGGTCATGCCGTCACTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78112333|gb|DV530727.1|DV530727
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|71764011|gb|DR961948.1|DR961948
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|50328669|gb|CO523795.1|CO523795
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|78082524|gb|DV510936.1|DV510936
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|76288759|gb|DV028327.1|DV028327
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|91874194|gb|EB404151.1|EB404151
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|71758159|gb|DR956096.1|DR956096
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|78120350|gb|DV538734.1|DV538734
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|74233955|gb|DT641869.1|DT641869
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|148934104|gb|EC878118.2|EC878118
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|76926808|gb|DV171015.1|DV171015
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|149082574|gb|EE171769.2|EE171769
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|71767925|gb|DR965862.1|DR965862
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|78089315|gb|DV517689.1|DV517689
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|76917088|gb|DV166674.1|DV166674
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|76010505|gb|DT937675.1|DT937675
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|93283664|gb|EB675928.1|EB675928
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|78107103|gb|DV525521.1|DV525521
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|50327191|gb|CO522317.1|CO522317
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|91869460|gb|EB400396.1|EB400396
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|76010835|gb|DT938005.1|DT938005
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|71444735|gb|DR825785.1|DR825785
EST:     CCACGTACACCGCATGGTACCTCACCATCGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGACCCAAGCAAGATGGTGCTGTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|94474307|gb|EB703265.1|EB703265
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|148959931|gb|EE153170.2|EE153170
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|88748025|gb|DY532166.1|DY532166
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|78088592|gb|DV516985.1|DV516985
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|78125247|gb|DV543631.1|DV543631
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|148966351|gb|EE017338.2|EE017338
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|149098688|gb|EE184698.2|EE184698
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|76922170|gb|DV168885.1|DV168885
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|78076145|gb|DV504579.1|DV504579
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|76021210|gb|DT948380.1|DT948380
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|71758786|gb|DR956723.1|DR956723
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|149095643|gb|EE181265.2|EE181265
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|76016574|gb|DT943744.1|DT943744
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|86465793|gb|DY232166.1|DY232166
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|50330173|gb|CO525299.1|CO525299
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|76280995|gb|DV020563.1|DV020563
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|86470112|gb|DY236482.1|DY236482
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|89252694|gb|DY624480.1|DY624480
EST:     CGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAAGATGGTGCTCTACTTCAC
genomic: CGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGC-AAGATGGTGCTCTACTTCAC
EST: gi|76010802|gb|DT937972.1|DT937972
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|71301533|gb|DR786807.1|DR786807
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|71769396|gb|DR967333.1|DR967333
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|86470985|gb|DY237355.1|DY237355
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|91050270|gb|EB160688.1|EB160688
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
EST: gi|149095642|gb|EE181264.2|EE181264
EST:     CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAG                         GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC
genomic: CCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgc ... aatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagatcgtgtatatggccgtaccaaacattaattgatggacgacaatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT
                        aaacattaattgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatatgcgctgagcgtgtgatatgatgcactagtcgattgatcgcctgcttgcgctatgtccagcagatcgtgtatatggccgtaccaaacattaattgatggacgacaatattatagGTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG