1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcatcacttttcgctaatagtatccactatttgccctaaaaaaggtcttcactgatcactgtgattgcaatgaatttctctgctcactattgtataccaccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGGCAAATGCATGCTTTTATATGTTTGTAGATGAAGAAACAGAGGCTTATGT
species | Zea mays |
transcript | GRMZM2G044866_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTG GAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGGEST: gi|211406202|gb|FL194791.1|FL194791
genomic: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTGgtatgcatca ... caccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGG
EST: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTG GAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGGEST: gi|211406201|gb|FL194790.1|FL194790
genomic: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTGgtatgcatca ... caccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGG
EST: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTG GAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGGEST: gi|211406199|gb|FL194788.1|FL194788
genomic: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTGgtatgcatca ... caccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGG
EST: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTG GAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGGEST: gi|211530401|gb|FL405489.1|FL405489
genomic: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTGgtatgcatca ... caccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGG
EST: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTG GAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGGEST: gi|474223|gb|T18400.1|T18400
genomic: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTGgtatgcatca ... caccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGG
EST: AGCTTCTGCTATTTTTG GAAATNATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGGEST: gi|211406198|gb|FL194787.1|FL194787
genomic: AGCTTCTGCTATTTTTGgtatgcatca ... caccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGG
EST: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTG GAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGG
genomic: GCTAGAGATGGAGCAATGCCACGATCTAGTCGTAGCTTCTGCTATTTTTGgtatgcatca ... caccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGG
tgatcactgtgattgcaatgaatttctctgctcactattgtataccaccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGGCAAATGCATGCTTTTATATGTTTGTAGATGAAGAAACAGAGGCTTATGT
tgctcac putative branch site (score: 2)
aatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatcacttttcgctaatagtatccactatttgccctaaaaaaggtcttcactgatcactgtgattgcaatgaatttctctgctcactattgtataccaccgctcagGAAATTATGATATGATTCAGCATCCGAGGAACATCAGTGATTTTTCAAAGGCAAATGCATGCTTTTATATGTTTGTAGATGAAGAAACAGAGGCTTATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA