1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaggtccagctttcactgtccttccctcgatgtatgcacgcaccaatcttgactcgaacctgctgctgctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGCGATCCCTGGAAGCTGTGCTCGGTGACGCAGGTGGAGGAGGTCAAGAGC
species | Zea mays |
transcript | GRMZM2G044851_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGEST: gi|71314198|gb|DR793713.1|DR793713
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
EST: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGEST: gi|76927973|gb|DV171442.1|DV171442
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
EST: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGEST: gi|74240218|gb|DT648132.1|DT648132
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
EST: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGEST: gi|71417412|gb|DR804041.1|DR804041
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
EST: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGEST: gi|86474662|gb|DY241032.1|DY241032
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
EST: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGEST: gi|50328863|gb|CO523989.1|CO523989
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
EST: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGEST: gi|148987144|gb|EE030972.2|EE030972
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
EST: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGEST: gi|78123381|gb|DV541765.1|DV541765
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
EST: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
tccctcgatgtatgcacgcaccaatcttgactcgaacctgctgctgctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGCGATCCCTGGAAGCTGTGCTCGGTGACGCAGGTGGAGGAGGTCAAGAGC
tcttgac putative branch site (score: 13)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtccagctttcactgtccttccctcgatgtatgcacgcaccaatcttgactcgaacctgctgctgctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCGCGATCCCTGGAAGCTGTGCTCGGTGACGCAGGTGGAGGAGGTCAAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG