1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaccacaatgaaacctcgtcaattgaagatataaggctggtttggttgtacttttagcaattacacatgcatatccttgatagaaaaaatatctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAATATTGTGGTACGTGTTATGGTGCTGAGGAG
species | Zea mays |
transcript | GRMZM2G044457_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG ATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAAEST: gi|32829302|gb|CD968980.1|CD968980
genomic: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAGgttagtggcc ... atctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAA
EST: CACATGGTAATGTTATTGAAGCAAGAAAAGGAAGCATTGGTGGAGCAAAG ATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAAEST: gi|149111503|gb|EE295005.2|EE295005
genomic: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAGgttagtggcc ... atctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAA
EST: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG ATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAAACAEST: gi|91873243|gb|EB403200.1|EB403200
genomic: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAGgttagtggcc ... atctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAA-CA
EST: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG ATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAAEST: gi|148944284|gb|EC889380.2|EC889380
genomic: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAGgttagtggcc ... atctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAA
EST: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG ATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAAEST: gi|50334991|gb|CO530117.1|CO530117
genomic: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAGgttagtggcc ... atctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAA
EST: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG ATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAAEST: gi|149090670|gb|EE179995.2|EE179995
genomic: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAGgttagtggcc ... atctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAA
EST: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG ATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAAEST: gi|67035454|gb|CO463987.1|CO463987
genomic: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAGgttagtggcc ... atctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAA
EST: CACATGGTAATGTTATTGAAGCAAGAAAAGGAAGCATTGGTGGAGCAAAG ATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAAEST: gi|149027104|gb|EE046395.2|EE046395
genomic: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAGgttagtggcc ... atctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAA
EST: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG ATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAA
genomic: CACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAGgttagtggcc ... atctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAA
ttgtacttttagcaattacacatgcatatccttgatagaaaaaatatctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAATATTGTGGTACGTGTTATGGTGCTGAGGAG
ccttgat putative branch site (score: 133)
ttgatagaaaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccacaatgaaacctcgtcaattgaagatataaggctggtttggttgtacttttagcaattacacatgcatatccttgatagaaaaaatatctgtatagATCGAGAGACCATTGCAAAAACATGGAGGAAGGCTCGACAAAGGTGAACAATATTGTGGTACGTGTTATGGTGCTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
aaccaca
- - - - - - - - - - - - - - - - - ggctggt
- - - - - - - - - - - - - - - - - - - - -ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat