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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgatttcttatgagccttagactcttaactatggcagtagcctccctttactatctttattcttgaagattgttcaagtccatgaatttgtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATTTTTCTTTTGCTTGTGGTATGCGTCAAAGAAGCATTGGCTTGCAAACAA

Basic information

species Zea mays
transcript GRMZM2G044348_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7137682|gb|AW499217.1|AW499217
EST:     AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT                         CACTCTCGGTGGAGTTCACAAAGTCCCAGATTGTTGCCTCAATACCTGGAT
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: gi|67018214|gb|CO446963.1|CO446963
EST:     AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT                         CACTCTCGGTGGAGTTCACAAAGTCCCAGATTGTTGCCTCAATACCTGGAT
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: gi|148944600|gb|EC889730.2|EC889730
EST:     AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT                         CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: gi|166541555|gb|EG203293.1|EG203293
EST:     CGTCTGGCGGGCTCCATTCTTCCACT                         CACTCTCGGTGGAGTTCACAAAGTCCCAGATTGTTGCCTCAATACCTGGAT
genomic: CGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttactatctttattcttgaagattgttcaagtccatgaatttgtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATTTTTCTTTTGCTTGTGGTATGCGTCAAAGAAGCATTGGCTTGCAAACAA
                                          tttgttt  CT-rich tract
                                     atgaatttgtttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgatttcttatgagccttagactcttaactatggcagtagcctccctttactatctttattcttgaagattgttcaagtccatgaatttgtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATTTTTCTTTTGCTTGTGGTATGCGTCAAAGAAGCATTGGCTTGCAAACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC