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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttcctatccatttaccatagaactgacaaaggaaaataatatgcatttatgctttaactgttgcttgttgcacatcatctgtttcagAGGATGCTTATGACTGAGTTTCAATTGCCGTATAAAGCACTGCCATACTCAGAGTTTGAG

Basic information

species Zea mays
transcript GRMZM2G044317_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044317_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 3'ss of exon 4
gtgacttcctatccatttaccatagaactgacaaaggaaaataatatgcatttatgctttaactgttgcttgttgcacatcatctgtttcagAGGATGCTTATGACTGAGTTTCAATTGCCGTATAAAGCACTGCCATACTCAGAGTTTGAG
||||||| || ||| |||     | |     ||| | ||  ||        | |||||||||| ||| ||||   ||||   | | ||||||||||||||||||| |||||||| | | || || |||||| ||||| |||| || ||||||
gtgactttctgtccttttcttgcata-----caaggaaagcta--------tcatgctttaaccgttccttgc--cacactgtatttttcagAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaataatatgcatttatgctttaactgttgcttgttgcacatcatctgtttcagAGGATGCTTATGACTGAGTTTCAATTGCCGTATAAAGCACTGCCATACTCAGAGTTTGAG
                   ctttaac  putative branch site (score: 3)
                                             tctgtttc  putative PPT
            atttat  TA-rich tract