1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgctaaacttaccggatagaagatccattttataactgcacgtgacatggaccatgatataaatatctgaattttctgctgcttctcaatgctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCTCATCAATTTTATGATTTCGAAAG
species | Zea mays |
transcript | GRMZM2G044092_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTG ACGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCEST: gi|74243620|gb|DT651534.1|DT651534
genomic: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGgtatgctaaa ... gctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACC
EST: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTG ATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCEST: gi|148983451|gb|EE029465.2|EE029465
genomic: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGgtatgctaaa ... gctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACC
EST: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTG ATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCEST: gi|91874079|gb|EB404036.1|EB404036
genomic: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGgtatgctaaa ... gctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACC
EST: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTG ATGGCTTGGGGGGAAATGTCAATGATCAAEST: gi|148945621|gb|EC890879.2|EC890879
genomic: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGgtatgctaaa ... gctaatacagATGGCTTGGGGGGAAATGTCAATGATCAA
EST: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTG ATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCEST: gi|149042713|gb|EE047228.2|EE047228
genomic: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGgtatgctaaa ... gctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACC
EST: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTG ATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCEST: gi|71312821|gb|DR792939.1|DR792939
genomic: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGgtatgctaaa ... gctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACC
EST: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTG ATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCEST: gi|71772492|gb|DR970424.1|DR970424
genomic: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGgtatgctaaa ... gctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACC
EST: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTG ATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACC
genomic: AGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGgtatgctaaa ... gctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACC
catggaccatgatataaatatctgaattttctgctgcttctcaatgctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCTCATCAATTTTATGATTTCGAAAG
tgctaat putative branch site (score: 49)
atgatataaatatctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctaaacttaccggatagaagatccattttataactgcacgtgacatggaccatgatataaatatctgaattttctgctgcttctcaatgctaatacagATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCTCATCAATTTTATGATTTCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG