1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgtatactttcaacaccgaatacttgatttttggatgctcgattcacctctgtcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAAAAGGACATGGGAGGCGCGGCGGCGGTGTTTGGTGCAGCAGAGGTTTTG
species | Zea mays |
transcript | GRMZM2G043893_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAEST: gi|101393107|gb|EB818484.1|EB818484
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAEST: gi|148958192|gb|EC904397.2|EC904397
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAEST: gi|148991871|gb|EE033465.2|EE033465
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAEST: gi|149001041|gb|EE038290.2|EE038290
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAEST: gi|71774294|gb|DR972172.1|DR972172
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAEST: gi|149076392|gb|EE165010.2|EE165010
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: CGTCAGGAGGAAGCTGGCTCTTGTTGGAAAAGGCATAACATTNGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAEST: gi|71758309|gb|DR956246.1|DR956246
genomic: CGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAEST: gi|76913694|gb|DV165227.1|DV165227
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: CATAACATTTGACAG CGGGGGCTACAACATCAAGGGCCGTACCGGTCGCCACCATCGAGCTCATGAEST: gi|89252259|gb|DY624045.1|DY624045
genomic: CATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAA-GGCCGTACCGGTCGCCACCATCGAGCTCATGA
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTGCCGGTCGCCACCATCGAGCTCATGAAEST: gi|71318207|gb|DR795866.1|DR795866
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAEST: gi|74236861|gb|DT644775.1|DT644775
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
EST: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAG CGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
genomic: GACGTCAGGAGGAAGCTGGCTCTTGTTGGGAAAGGCATAACATTTGACAGgttcgtatac ... tcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAA
tttcaacaccgaatacttgatttttggatgctcgattcacctctgtcgtctccagCGGCGGCTACAACATCAAGGCCGTACCGGTCGCCACCATCGAGCTCATGAAAAAGGACATGGGAGGCGCGGCGGCGGTGTTTGGTGCAGCAGAGGTTTTG
acttgat putative branch site (score: 23)
cctctgtcgtctcc putative PPT
aatacttgattttt TA-rich tract