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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctggtttagtgttttttatgctaagcatgtgcttgttcccgcttcttgttcatgacgttcagttggaaaatgctggccttctctttttcttattgtttgatagGTGGATCCTCTTTCCCACCAAGTCAAGGTTTGTGACTTCGGGAGTGCTAAAATCTTG

Basic information

species Zea mays
transcript GRMZM2G043350_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043350_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g35530.1 (Oryza sativa), 3'ss of exon 5
gtatgctggtttagtgttttttatgctaagcatgtgcttgttcccgcttcttgttcatgacgt--tcagttggaaaatgctggccttctctttttcttattgt-ttgatagGTGGATCCTCTTTCCCACCAAGTCAAGGTTTGTGACTTCGGGAGTGCTAAAATCTTG
                             | |||  ||| |   |    |  |   || | ||  |||    |     ||||    |   |  || | ||||| ||||||||| ||||||||| |||||||||| ||||| ||||| || ||||||||||||||  ||
-----------------------------gtatgcccttttcttcttaccaagcgtatcatgttttcacactgctgcagctgaaaattcttggttttgattgtgttgatagGTTGATCCTCTTACCCACCAAGTGAAGGTCTGTGATTTTGGGAGTGCTAAAATGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211363839|gb|FL067525.1|FL067525
EST:     ATACTGTACCAGGAATTTGTCACCGAGATATTAAGCCTCAGAATATCTTG                         GTGGATCCTCTTTCCCACCAAGTCAAGGTTTGTGACTTCGGGAGTGCTAAA
genomic: ATACTGTACCAGGAATTTGTCACCGAGATATTAAGCCTCAGAATATCTTGgtatgctggt ... tgtttgatagGTGGATCCTCTTTCCCACCAAGTCAAGGTTTGTGACTTCGGGAGTGCTAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatgacgttcagttggaaaatgctggccttctctttttcttattgtttgatagGTGGATCCTCTTTCCCACCAAGTCAAGGTTTGTGACTTCGGGAGTGCTAAAATCTTG
                            ccttctctttttctta  CT-rich tract
                                   tttttcttattgttt  TA-rich tract