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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaatatttccaaagatttatgcttcattttttccctccccgtggcaactgaaaagtaatatacaaatgttgccggtattaagcttctcttcattgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGGTT

Basic information

species Zea mays
transcript GRMZM2G043198_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043198_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g42410.2 (Oryza sativa), 3'ss of exon 2
gtcagtaatatttccaaagatttatgcttcattttttccctccccgtggcaactgaaaagtaatatacaaatgttgccggtattaagcttctcttcattg-------ttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGGTT
|| |||||| |||   | ||   |||||   |||   || |   | || ||      || |||| |   |||  |       | |||||||||||   ||       ||||||||||| ||||||||| | ||||| |||||||| ||||||||||| || || || ||||| |||   
gtgagtaatttttatta-gaccaatgctgtctttggcccattatcatgacat-----aattaatttctgaatactaaata-gtaaagcttctctttcctgcaacattttgcagATATCGAAGGGTTTGTTAGACAAATATGGCCCTGATAGGGTTCTTGACACACCAATCACAGAG---

upper sequence: GRMZM2G043198_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G02380.2 (Glycine max), 3'ss of exon 4
gtcagtaatatttccaaagatttat-gcttcattttttccctccccgtggcaactgaaaagtaatatacaaatgttgccggtattaagcttctcttcattgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGGTT
                  | ||  | | ||  ||  ||   |   | || ||||          | ||  ||  |       | | | |||   |   |  ||  |||||||||||||  |||| || |||| ||||||||| |||||||| |||||||| |||||||||   
---------------gttggttggttggttggttggtttagttgtcttgccaacct---ctccttttaagaacttcatta--acttaactttcttctttcattttagATATCCAAGGGGCTGCTCGAAAAGTTTGGCCCCGAGAGGGTTCTTGATACTCCAATCACTGAG---

upper sequence: GRMZM2G043198_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G46380.2 (Glycine max), 3'ss of exon 4
gtcagtaatatttccaaagatttatgcttcattttttccctccccgtggcaactgaaaagtaatatacaaatgttgccggtattaagcttctcttcattgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGGTT
||  ||  |  ||||  || |    |||| | || |     | || |  |  || || |                  |   |||||  |    |||||| |   |||||||||||||  |||| ||||||||||||||||| ||||||||||||||||| |||||||||   
gttggt--tgcttccttagtt----gctttacttgtcttgccaccctctcctcttaagaa-----------------cttcattaacttaactttcatttt---agATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG---

upper sequence: GRMZM2G043198_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G36540.2 (Glycine max), 3'ss of exon 4
gtcagtaatatttccaaagatttatgcttcattttttccctccccgtggcaactgaaaagtaatatacaaatgttgccggtattaagcttct--cttcatt-gttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGGTT
                  | |   |  ||  ||  ||   |   | || ||||          | ||  ||  |    |   ||||  ||||  |||| ||  ||  |||||||||||||  |||| ||||||||||||||||| ||||||||||||||||| |||||||||   
------------------gttggttagttagttagtttagttgtcttgccaacct---ctccttttaagaacttcattgac-ttaactttcttccttctttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211099620|gb|FL375433.1|FL375433
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|149112130|gb|EE191255.2|EE191255
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211273080|gb|FL371948.1|FL371948
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|71432759|gb|DR813809.1|DR813809
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|71310907|gb|DR791756.1|DR791756
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211063939|gb|FL426137.1|FL426137
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|31355375|gb|CD439732.1|CD439732
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211017664|gb|FL418154.1|FL418154
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|76282096|gb|DV021664.1|DV021664
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211444057|gb|FL415432.1|FL415432
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211423792|gb|FL402788.1|FL402788
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211395332|gb|FL395257.1|FL395257
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211491514|gb|FL426447.1|FL426447
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGG-TTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|149008831|gb|EE041037.2|EE041037
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|22473034|gb|BU037529.1|BU037529
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211054277|gb|FL399886.1|FL399886
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|148953725|gb|EC899090.2|EC899090
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         AAATCCAAGGGTTTGCTTGAACA-GTATGGCCCCGATAGG
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGA-CAAGTATGGCCCCGATAGG
EST: gi|211016844|gb|FL388973.1|FL388973
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211003333|gb|FL404181.1|FL404181
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|50323851|gb|CO518977.1|CO518977
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|50338477|gb|CO533603.1|CO533603
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|148962973|gb|EE013917.2|EE013917
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211431560|gb|FL401076.1|FL401076
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|148957039|gb|EC902998.2|EC902998
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|149083342|gb|EE172638.2|EE172638
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211530195|gb|FL395784.1|FL395784
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|78112129|gb|DV530525.1|DV530525
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|148986266|gb|EE029999.2|EE029999
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|18964295|gb|BM660923.1|BM660923
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211493595|gb|FL394896.1|FL394896
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATA-GGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|38687965|gb|CK144996.1|CK144996
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|149083993|gb|EE173384.2|EE173384
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|32828953|gb|CD968631.1|CD968631
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|149008355|gb|EE040508.2|EE040508
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211499368|gb|FL394923.1|FL394923
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|149080209|gb|EE169232.2|EE169232
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|78092119|gb|DV520493.1|DV520493
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|20507600|gb|BQ279700.1|BQ279700
EST:     GTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|32828890|gb|CD968568.1|CD968568
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|71431246|gb|DR812296.1|DR812296
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|149060161|gb|EE157129.2|EE157129
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|8367328|gb|BE050273.1|BE050273
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTT
EST: gi|148995150|gb|EE034430.2|EE034430
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|71316612|gb|DR794981.1|DR794981
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|32804720|gb|CD956956.1|CD956956
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211056917|gb|FL385087.1|FL385087
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCCGATAGGGTTCTCGATAC
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCC-GATAGGGTTCTCGATAC
EST: gi|31354921|gb|CD439278.1|CD439278
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|31357689|gb|CD442046.1|CD442046
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211503999|gb|FL380203.1|FL380203
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211479962|gb|FL426376.1|FL426376
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|8367560|gb|BE050505.1|BE050505
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|148945013|gb|EC890191.2|EC890191
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|148933048|gb|EE285947.2|EE285947
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|148936258|gb|EC880337.2|EC880337
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|50338853|gb|CO533979.1|CO533979
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|50322511|gb|CO517637.1|CO517637
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|71442750|gb|DR823800.1|DR823800
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211084499|gb|FL378037.1|FL378037
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|93017393|gb|EB642913.1|EB642913
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|149097247|gb|EE183065.2|EE183065
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|93281968|gb|EB674232.1|EB674232
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|213187914|gb|FM182663.1|FM182663
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211311674|gb|FL419261.1|FL419261
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgaaaagtaatatacaaatgttgccggtattaagcttctcttcattgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGGTT
                                    cttctcttcattgtt  CT-rich tract
     aaagtaatatacaaat  TA-rich tract