1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaacttgtcttgtatctgtttttcaactttccccatcaattccatgtcatctattcaacatgacattgattttacttaacctgtagCGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAATGGATACCCTGACAGCAG
species | Zea mays |
transcript | GRMZM2G043056_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAAATTTACCGCACAAGAAGTTGCTGCCCTTCAAGAAGGGGGGAATGAG CGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAATGGATACEST: gi|71428282|gb|DR809332.1|DR809332
genomic: CCAAATTTACCGCACAAGAAGTTGCTGCCCTTCAAGAAGGGGGGAATGAGgtaacttgtc ... taacctgtagCGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAATGGATAC
EST: CCAAATTTACCGCACAAGAAGTTGCTGCCCTTCAAGAAGGGGGGAATGAG CGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAATGGATACEST: gi|211246819|gb|FL131898.1|FL131898
genomic: CCAAATTTACCGCACAAGAAGTTGCTGCCCTTCAAGAAGGGGGGAATGAGgtaacttgtc ... taacctgtagCGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAATGGATAC
EST: CCAAATTTACCGCACAAGAAGTTGCTGCCCTTCAAGAAGGGGGGAATGAG CGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAAEST: gi|78115033|gb|DV533421.1|DV533421
genomic: CCAAATTTACCGCACAAGAAGTTGCTGCCCTTCAAGAAGGGGGGAATGAGgtaacttgtc ... taacctgtagCGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAA
EST: CCAAATTTACCGCACAAGAAGTTGCTGCCCTTCAAGAAGGGGGGAATGAG CGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAATGGATAC
genomic: CCAAATTTACCGCACAAGAAGTTGCTGCCCTTCAAGAAGGGGGGAATGAGgtaacttgtc ... taacctgtagCGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAATGGATAC
cccatcaattccatgtcatctattcaacatgacattgattttacttaacctgtagCGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAATGGATACCCTGACAGCAG
acttaac putative branch site (score: 52)
ttttactt CT-rich tract
attgattttacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttgtcttgtatctgtttttcaactttccccatcaattccatgtcatctattcaacatgacattgattttacttaacctgtagCGTGCTAGAGAAGTATTTTTCAAGGAATGGGATCCTCAACGAAATGGATACCCTGACAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA