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gtaagtgaatcgttctggccatctggagaaggatttttgttgcgtaaccttgccattgagactgtcctaatcatagtgccatttcaaatcttgtttcagACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTACTGGGACAGCTATTGATTGGGTCCAGATGCCTGGGATGAAG
species | Zea mays |
transcript | GRMZM2G042250_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATGTCACTGCCCCTCCAAACGCTATAAGGGATGCAAGTAACCCTTCTGG ACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTACEST: gi|211282791|gb|FL192982.1|FL192982
genomic: AATGTCACTGCCCCTCCAAACGCTATAAGGGATGCAAGTAACCCTTCTGGgtaagtgaat ... cttgtttcagACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTAC
EST: AATGTCACTGCCCCTCCAAACGCTATAAGGGATGCAAGTAACCCTTCTGG ACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTACEST: gi|37421438|gb|CF648417.1|CF648417
genomic: AATGTCACTGCCCCTCCAAACGCTATAAGGGATGCAAGTAACCCTTCTGGgtaagtgaat ... cttgtttcagACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTAC
EST: AATGTCACTGCCCCTCCAAACGCTATAAGGGATGCAAGTAACCCTTCTGG ACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTACEST: gi|31611910|gb|CD568532.1|CD568532
genomic: AATGTCACTGCCCCTCCAAACGCTATAAGGGATGCAAGTAACCCTTCTGGgtaagtgaat ... cttgtttcagACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTAC
EST: AATGTCACTGCCCCTCCAAACGCTATAAGGGATGCAAGTAACCCTTCTGG ACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTAC
genomic: AATGTCACTGCCCCTCCAAACGCTATAAGGGATGCAAGTAACCCTTCTGGgtaagtgaat ... cttgtttcagACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTAC
taaccttgccattgagactgtcctaatcatagtgccatttcaaatcttgtttcagACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTACTGGGACAGCTATTGATTGGGTCCAGATGCCTGGGATGAAG
tcctaat putative branch site (score: 2)
tcttgtttc putative PPT
atttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaatcgttctggccatctggagaaggatttttgttgcgtaaccttgccattgagactgtcctaatcatagtgccatttcaaatcttgtttcagACTCCTTGCGATTGCGGAGGAGACCTTCACAGAGTTCCTCTCAAAGGCTACTGGGACAGCTATTGATTGGGTCCAGATGCCTGGGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG