1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgacacctttcacattgttttgtcgatttcactctaattgttactgcttgcgtaacctagcttcctcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGCAGGTACCTGGTGCCGAAGCCAGCGCCAGTGCAGCTGCACAGGATGATGA
species | Zea mays |
transcript | GRMZM2G041881_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGCCAACAATTATCAACCAACTGG GCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGCEST: gi|18655303|gb|BM500108.1|BM500108
genomic: TCTGCCAACAATTATCAACCAACTGGgtatgacacc ... tcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGC
EST: CTACAAGACCTTCTGCCAACAATTATCAACCAACTGG GCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGCEST: gi|18654856|gb|BM499661.1|BM499661
genomic: CTACAAGACCTTCTGCCAACAATTATCAACCAACTGGgtatgacacc ... tcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGC
EST: CCTTCTGCCAACAATTATCAACCAACTGG GCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGCEST: gi|18661878|gb|BM501629.1|BM501629
genomic: CCTTCTGCCAACAATTATCAACCAACTGGgtatgacacc ... tcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGC
EST: GTCTACAAGACCTTCTGCCAACAATTATCAACCAACTGG GCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGCEST: gi|33091248|gb|CF051242.1|CF051242
genomic: GTCTACAAGACCTTCTGCCAACAATTATCAACCAACTGGgtatgacacc ... tcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGC
EST: GTCTACAAGACCTTCTGCCAACAATTATCAACCAACTGG GCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGCEST: gi|6194722|gb|AW146826.1|AW146826
genomic: GTCTACAAGACCTTCTGCCAACAATTATCAACCAACTGGgtatgacacc ... tcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGC
EST: GTCTACAAGACCTTCTGCCAACAATTATCAACCAACTGG GCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGCEST: gi|18963263|gb|BM660335.1|BM660335
genomic: GTCTACAAGACCTTCTGCCAACAATTATCAACCAACTGGgtatgacacc ... tcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGC
EST: CTACAAGACCTTCTGCCAACAATTATCAACCAACTGG GCCCTGATAACCTGGAGAACCTCAAGAGGC-TGCTGAGCATTTCCAGAAGC
genomic: CTACAAGACCTTCTGCCAACAATTATCAACCAACTGGgtatgacacc ... tcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGC
tgtcgatttcactctaattgttactgcttgcgtaacctagcttcctcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGCAGGTACCTGGTGCCGAAGCCAGCGCCAGTGCAGCTGCACAGGATGATGA
gcgtaac putative branch site (score: 210)
cctagcttcctcctct CT-rich tract
taattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacacctttcacattgttttgtcgatttcactctaattgttactgcttgcgtaacctagcttcctcctcttcagGCCCTGATAACCTGGAGAACCTCAAGAGGCTTGCTGAGCATTTCCAGAAGCAGGTACCTGGTGCCGAAGCCAGCGCCAGTGCAGCTGCACAGGATGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG