1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtcaattgtaatttttggtattttttttactgttagctacaacttcaaacaattgatttgtttgatttacttctgtcgtatttatcaatgtccttgcagATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTTAGTTGGGATGCTGAAGGTTGACACCTGTTGAAGAATTTTGGTTGCATAG
species | Zea mays |
transcript | GRMZM2G041847_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGCATATTTCTGCACTAATTCTGCAACATTTTGGTGATGGGTTCTGATG ATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTTEST: gi|5713902|gb|AI943887.1|AI943887
genomic: AGGCATATTTCTGCACTAATTCTGCAACATTTTGGTGATGGGTTCTGATGgtaagcgtta ... gtccttgcagATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTT
EST: AGGCATATTTCTGCACTAATTTTGCAACATTTTGGTGATGGGTTCTGATG ATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTTEST: gi|78093398|gb|DV521772.1|DV521772
genomic: AGGCATATTTCTGCACTAATTCTGCAACATTTTGGTGATGGGTTCTGATGgtaagcgtta ... gtccttgcagATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTT
EST: AGGCATATTTCTGCACTAATTCTGCAACATTTTGGTGATGGGTTCTGATG ATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTTEST: gi|211409938|gb|FL461969.1|FL461969
genomic: AGGCATATTTCTGCACTAATTCTGCAACATTTTGGTGATGGGTTCTGATGgtaagcgtta ... gtccttgcagATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTT
EST: AGGCATATTTCTGCACCAATTCTGCAACATTTTGGTGATGGGTTCTGATG ATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTT
genomic: AGGCATATTTCTGCACTAATTCTGCAACATTTTGGTGATGGGTTCTGATGgtaagcgtta ... gtccttgcagATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTT
tcaaacaattgatttgtttgatttacttctgtcgtatttatcaatgtccttgcagATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTTAGTTGGGATGCTGAAGGTTGACACCTGTTGAAGAATTTTGGTTGCATAG
tgtcctt CT-rich tract
atttgtttgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcaattgtaatttttggtattttttttactgttagctacaacttcaaacaattgatttgtttgatttacttctgtcgtatttatcaatgtccttgcagATGCATTCTGGGATTGCTGAACGCTGCATGAGATCCAGGACAACTCTCTTTAGTTGGGATGCTGAAGGTTGACACCTGTTGAAGAATTTTGGTTGCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - -ttttggt
- - - - - - - - - - - - - tttactg
- - - - - - - - - - - - - - - - - -agctaca
- - - - - - - - - - - - - - - - - - - - - - - -aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtttg