1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaggtcatcttattttgtagtttgttactgattagcctgcataaaagttaccatgatgaatcagatcttaacagaaattgtttgtgaatctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTGGAGTTACAGA
species | Zea mays |
transcript | GRMZM2G039711_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|50328328|gb|CO523454.1|CO523454
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|76010570|gb|DT937740.1|DT937740
genomic: GTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|13249987|gb|BG360890.1|BG360890
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|13558127|gb|BG549483.1|BG549483
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|78122387|gb|DV540771.1|DV540771
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|71763142|gb|DR961079.1|DR961079
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|110221084|gb|EC902982.1|EC902982
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATTTTTEST: gi|89251868|gb|DY623654.1|DY623654
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|94475013|gb|EB703971.1|EB703971
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|101395559|gb|EB819707.1|EB819707
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|76935532|gb|DV174363.1|DV174363
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|71431017|gb|DR812067.1|DR812067
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGG-AAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|16919446|gb|BM074197.1|BM074197
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTEST: gi|71333251|gb|DR803680.1|DR803680
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
EST: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAA CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
genomic: GGAAGCTTGCTGTACAAGCACTGTTTGGAAAAATCCTATACTTATCAGAAgtaagcggtt ... ctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTT
aagttaccatgatgaatcagatcttaacagaaattgtttgtgaatctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTGGAGTTACAGA
tcttaac putative branch site (score: 119)
tctctgtcc putative PPT
aaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggtcatcttattttgtagtttgttactgattagcctgcataaaagttaccatgatgaatcagatcttaacagaaattgtttgtgaatctctgtccagCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTGGAGTTACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - -gcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt