Sequence
atgc intronic sequence ATGC exonic sequencegtacttattattttattactctgtattttgtgttgaacatatacccattatggaatgatatgtatttctataaattttagATGGCCAATGCTGTTCCAGTTCTATGTGTTGCAAGGAATGTTGCTTGCAATGTTCGTGGTGGGTTTTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G039650_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g63820.1 (Oryza sativa), 3'ss of exon 4
gtacttatt---attttattactc-tgtattttgtgttgaacatatacccattatggaatgatatgtatttctataaattttagATGGCCAATGCTGTTCCAGTTCTATGTGTTGCAAGGAATGTTGCTTGCAATGTTCGTGGTGGGTTTTTCAG
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gtatttatttgtattttattgcttacactttttttggtcaacaatatctcattctggaccc-------tgtttgcatattttagATGGCAAATGCTGTGCCTGTGCTTTGTGTTGCAAGAAATGTTGCTTGCAATGTTCGTGGTGGTTTCTTCAG
upper sequence: GRMZM2G039650_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA07G17940.1 (Glycine max), 3'ss of exon 4
----gtacttattattttattactctgtattttgtgttgaacatatacccattatggaatgatatgtatttctataaattttagATGGCCAATGCTGTTCCAGTTCTATGTGTTGCAAGGAATGTTGCTTGCAATGTTCGTGGTGGGTTTTTCAG
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gtttatgtatattattgcaatttttttaattttattttctaaatattcttgatagagactttagtatattcttttctttattagACAGCCAATGCTGTCCCAGTCCTATGTGTAGCAAGAAATGTTGCATGCAATGTCAGAGGTTGTTTTTTCAA
upper sequence: GRMZM2G039650_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA18G42790.1 (Glycine max), 3'ss of exon 4
---gtacttat-tattttattactctgt---attttgtgttgaacatatacccattatggaatgatatgtatttctataaattttagATGGCCAATGCTGTTCCAGTTCTATGTGTTGCAAGGAATGTTGCTTGCAATGTTCGTGGTGGGTTTTTCAG-
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tgtgggtttatgtatattactgcattttttaatttttttttctaaatattcatgatagagacactaatatattcttttctttattagaCGGCCAATGCTGTCCCAGTCCTATGTGTAGCAAGAAATGTTGCATGCAATGTCAGAGGTTGTTTTTTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgtgttgaacatatacccattatggaatgatatgtatttctataaattttagATGGCCAATGCTGTTCCAGTTCTATGTGTTGCAAGGAATGTTGCTTGCAATGTTCGTGGTGGGTTTTTCAG
tttctat CT-rich tract
aatgatatgtatttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttattattttattactctgtattttgtgttgaacatatacccattatggaatgatatgtatttctataaattttagATGGCCAATGCTGTTCCAGTTCTATGTGTTGCAAGGAATGTTGCTTGCAATGTTCGTGGTGGGTTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG