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gtaatacttagtcttttatggttggttctttatttgtgtttgtgcagatgtctttcataggtttctattacatttgcaaatattttacgcctccagtcaccctcgatgatctaattacccttttccaatttgtcatgtatttcctgcggatgaagtgtatgacaagttaaatcttgttttcagATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAAAAGGAGGCAGCTCTGCTAGAAGCAGAGAGGACTGTGCAAATTGCTATGG
species | Zea mays |
transcript | GRMZM2G039325_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAG ATTGCAAATCTCCAGGATGANCA-CAGAGCTTTGGATEST: gi|32931881|gb|CF036693.1|CF036693
genomic: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAGgtaatactta ... ttgttttcagATTGCAAATCTCCAGGATGA-CAACAGAGCTTTGGAT
EST: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAG ATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAAEST: gi|71444483|gb|DR825533.1|DR825533
genomic: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAGgtaatactta ... ttgttttcagATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAA
EST: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAG ATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAAEST: gi|13381901|gb|BG458576.1|BG458576
genomic: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAGgtaatactta ... ttgttttcagATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAA
EST: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAG ATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACATATCTTEST: gi|148943243|gb|EC888304.2|EC888304
genomic: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAGgtaatactta ... ttgttttcagATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAA
EST: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAG ATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAAEST: gi|148967769|gb|EE019046.2|EE019046
genomic: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAGgtaatactta ... ttgttttcagATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAA
EST: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAG ATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAAEST: gi|76930993|gb|DV172583.1|DV172583
genomic: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAGgtaatactta ... ttgttttcagATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAA
EST: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAG ATTGCAAATCTCCAGGATEST: gi|71439208|gb|DR820258.1|DR820258
genomic: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAGgtaatactta ... ttgttttcagATTGCAAATCTCCAGGAT
EST: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAG ATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAA
genomic: AAGCCATTCTTGCACCACTTGAAGCTGAGCTAAAGCTTTCTCGCCAGGAGgtaatactta ... ttgttttcagATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAA
tttgtcatgtatttcctgcggatgaagtgtatgacaagttaaatcttgttttcagATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAAAAGGAGGCAGCTCTGCTAGAAGCAGAGAGGACTGTGCAAATTGCTATGG
tcttgttttc CT-rich tract
ttaaatcttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacttagtcttttatggttggttctttatttgtgtttgtgcagatgtctttcataggtttctattacatttgcaaatattttacgcctccagtcaccctcgatgatctaattacccttttccaatttgtcatgtatttcctgcggatgaagtgtatgacaagttaaatcttgttttcagATTGCAAATCTCCAGGATGACAACAGAGCTTTGGATCGTCTAACAAAACAAAAGGAGGCAGCTCTGCTAGAAGCAGAGAGGACTGTGCAAATTGCTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA