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gtgggaacttatcttctctcctcacaatgatcttagcctagttatatcaagaaacaactaaacctctgtgctgtactgcatttctttgtactagagttatcaatcacaactttatttgttatgtttatcaaaaatataaaattgttaattgattttcttctgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG
species | Zea mays |
transcript | GRMZM2G038848_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAAGCTGGCGAGCAATTTGGATCAGTATTTCCCTCACTTGATAACACAG GACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGATEST: gi|211345290|gb|FL126063.1|FL126063
genomic: AAAAGCTGGCGAGCAATTTGGATCAGTATTTCC-TCACTTGATAACACAGgtgggaactt ... tgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGAT
EST: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAG GACCTGCCGAGACTGGTCGCCATAAAAGACGCTGACEST: gi|211345286|gb|FL126059.1|FL126059
genomic: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAGgtgggaactt ... tgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGAC
EST: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAG GACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGATEST: gi|211345285|gb|FL126058.1|FL126058
genomic: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAGgtgggaactt ... tgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGAT
EST: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAG GACCTGCCGAGACTGGTCGCAATAAAAGAEST: gi|30705270|gb|CD058727.1|CD058727
genomic: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAGgtgggaactt ... tgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGA
EST: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAG GACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGATEST: gi|71448245|gb|DR829295.1|DR829295
genomic: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAGgtgggaactt ... tgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGAT
EST: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAG GACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGATEST: gi|211345293|gb|FL126066.1|FL126066
genomic: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAGgtgggaactt ... tgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGAT
EST: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTKATAACACAG GAACCTGCCGAGACTGGTCGCAATAAAAGAMGCTGACTTTTCAGATGTTGAEST: gi|148946555|gb|EC884293.2|EC884293
genomic: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAGgtgggaactt ... tgatttgcagGA-CCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGA
EST: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAG GACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGATEST: gi|148942779|gb|EC887806.2|EC887806
genomic: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAGgtgggaactt ... tgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGAT
EST: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAG GACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGAT
genomic: GAAAAGCTGGCGAGCAATTTGGATCAGTATTTCCTCACTTGATAACACAGgtgggaactt ... tgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGAT
ttgttatgtttatcaaaaatataaaattgttaattgattttcttctgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG
ttctgat putative branch site (score: 3)
ttttcttctgattt CT-rich tract
atgtttatcaaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggaacttatcttctctcctcacaatgatcttagcctagttatatcaagaaacaactaaacctctgtgctgtactgcatttctttgtactagagttatcaatcacaactttatttgttatgtttatcaaaaatataaaattgttaattgattttcttctgatttgcagGACCTGCCGAGACTGGTCGCAATAAAAGACGCTGACTTTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT