1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agtgcattttgtctttctcaaatcagtatctccttgttggcacaatgtaacctggtgattgagttcatatgactgatggtgtttctctcacattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTGGAGAACATGTTTCTTTTGCTACTGTATTCACAACCTACAATTCTGTCTC
species | Zea mays |
transcript | GRMZM2G038667_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAG GACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTGEST: gi|60396179|gb|DN229048.1|DN229048
genomic: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactc ... cattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
EST: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAG GACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTGEST: gi|149046658|gb|EE048047.2|EE048047
genomic: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactc ... cattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
EST: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAG GACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
genomic: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactc ... cattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
tgtaacctggtgattgagttcatatgactgatggtgtttctctcacattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTGGAGAACATGTTTCTTTTGCTACTGTATTCACAACCTACAATTCTGTCTC
ctctcac putative branch site (score: 3)
tttctctcac CT-rich tract
ttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgcattttgtctttctcaaatcagtatctccttgttggcacaatgtaacctggtgattgagttcatatgactgatggtgtttctctcacattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTGGAGAACATGTTTCTTTTGCTACTGTATTCACAACCTACAATTCTGTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA