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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctctccactttattctttggcagttgatactacttggtgctgtctgcattaactctgttcttttgtctactgctttggcaccttaactgtcgcttgtgttaccaacagtattaatgcggatgtttacaaagTTCTTATGAAGGAGCTAGCTAAAACATTGGAGAAACAGTTCTCTGGCAATGCTGAATCTAGGGCAGCAGGAATGGTTATCAATACAATGGGGTGGGTTGA

Basic information

species Zea mays
transcript GRMZM2G038588_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038588_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g12570.1 (Oryza sativa), 3'ss of exon 4
gtacctctccactttattctttggcagttgatactacttggtgctgtctgcattaact-ctgttcttttg-tctactgctttggcaccttaactgtcgctt-gtgttaccaacagtattaatgcggatgtttacaaagTTCTTATGAAGGAGCTAGCTAAAACATTGGAGAAACAGTTCTCTGGCAATGCTGAATCTAGGGCAGCAGGAATGGTTATCAATACAATGGGGTGGGTTGA
               |         |  || |  | |   ||  | | |  |   ||| || ||||| |  || |||  |||||||||| |||| |  |||  |||| |  ||||| ||| | | |||||||||| || ||||||||||||||||||| | |||||||| ||||| |||||||| ||| ||||||||||||||||||||||| ||                       
---------------aacaaggcctaactgttttttccatgtattttatataaagacttcttttcttctactcaacttttttggcacctcaactatttctttatgttgctgacagTGTTAGTCCAGATGTTTACAGAGCTCTTATGAAGGAGCTAGCTCAGACATTGGATAAACAATTCTCTGGAAATTCTGAATCTAGGGCAGCAGGAATGATT-----------------------

upper sequence: GRMZM2G038588_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------gtacctctccac---tttattctttggcagttga-----tactacttggtgctgtctgcattaactctgttcttttgtctactgctttggcaccttaactgtcgcttgtgtt-accaacagtattaatgcggatgtttacaaagTTCTTATGAAGGAGCTAGCTAAAACATTGGAGAAACAGTTCTCTGGCAATGCTGAATCTAGGGCAGCAGGAATGGTTATCAATACAATGGGGTGGGTTGA
                                          | || || ||     | |||       || | |     | |  || |   || ||||  |    |    |    |   |    | |     | |    | |   ||| |||       ||| | ||||  ||  | |||||||| ||| |||||||||| |||  |||| ||||||  |||||||| || |||||||||||| | || || || |||||                        
gtaacttgcattgtttaacactttttatggttattgtcatctttccccttcatatactaatttccatttagctaagaatgtgcccctggacactttctgtttagtttaaaataaagtcattttgtcctaaattcttctggtatgttttgggtttggtgttagTGTCAATGTAGAGTTATACAAAGTGCTTGTGAAGGAGCTTGCTCGAACACTGGAGAGGCAGTTCTCCGGAAATGCTGAATCTCGAGCTGCTGGCATGGTG-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149089655|gb|EE178910.2|EE178910
EST:     ATTCCCTTGGAGATGCCACTGGTATACTTCTATGGTCACCCAAATCCAAG                         TTCTTATGAAGGAGCTAGCTAAAACATTGGAGAAACAGTTCTCTGGCAATG
genomic: ATTCCCTTGGAGATGCCACTGGTATACTTCTATGGTCACCCAAATCCAAGgtacctctcc ... gtttacaaagTTCTTATGAAGGAGCTAGCTAAAACATTGGAGAAACAGTTCTCTGGCAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcaccttaactgtcgcttgtgttaccaacagtattaatgcggatgtttacaaagTTCTTATGAAGGAGCTAGCTAAAACATTGGAGAAACAGTTCTCTGGCAATGCTGAATCTAGGGCAGCAGGAATGGTTATCAATACAATGGGGTGGGTTGA
                                tattaat  putative branch site (score: 2)
                              agtattaat  TA-rich tract