Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtacccgggccagagccttcatgctcgtcttaatatagtagcacgcggcgtgtctgcatgccatcgtgacagacagactagctgactggataggcgatcacctagctgtatcatgtatgctgctctcgtgtcgtgcagTTCCCGGACACCAATTTCATCGTGATGCTGTTCCACTACGACGGCGAGGTGGACGGGTGGCGAGACCTGGAGTGGTCGGGCCGCGCGATCCACGTCGGCG

Basic information

species Zea mays
transcript GRMZM2G038512_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038512_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g69050.1 (Oryza sativa), 3'ss of exon 5
gtaggtacccgggccagagccttcatgctcgtcttaatatagtagcacgcggcgtgtctgcatgccatcgtgacagacagactagctgactggataggcgatcacctagctgtatcatgtatgctgctct-cgtgtcgtgcagTTCCCGGACACCAATTTCATCGTGATGCTGTTCCACTACGACGGCGAGGTGGACGGGTGGCGAGACCTGGAGTGGTCGGGCCGCGCGATCCACGTCGGCG-
                                       | |   | || | |    |||| | ||||  ||  |  |   |  | |  |    ||  |     |  |      ||    |   || |   |||| | |||||||||| |    ||  ||||  |||||| |||||||||||||||||||| ||||||||||| | || || | |||||||| ||| ||||| ||||| |||| 
---------------------------------------tggggactcgagaccccgctgc-tcccatgctgg-atccgcccctggtagc-acttaaacttgagctgattctcgtcggcgacaatggttggcgtg-catgcagTTCCCCGGTGACAGGTTCACGGTGATGTTGTTCCACTACGACGGCGAGATGGACGGGTGGAGGGAACTCGGGTGGTCGGACCGGGCGATTCACGT-GGCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71301184|gb|DR786626.1|DR786626
EST:     TCCCCGTCGGCATCAAGCAGAAGGCGATCGTCGACAAGCTCGTATCCAAG                         TTCCCGGACACCAATTTCATCGTGATGCTGTTCCACTACGACGGCGAGGTG
genomic: TCCCCGTCGGCATCAAGCAGAAGGCGATCGTCGACAAGCTCGTATCCAAGgtaggtaccc ... tgtcgtgcagTTCCCGGACACCAATTTCATCGTGATGCTGTTCCACTACGACGGCGAGGTG
EST: gi|91048883|gb|EB159301.1|EB159301
EST:     TCCCCGTCGGCATCAAGCAGAAGGCGATCGTCGACAAGCTCGTATCCAAG                         TTCCCGGACACCAATTTCATCGTGATGCTGTTCCACTACGACGGCGAGGTG
genomic: TCCCCGTCGGCATCAAGCAGAAGGCGATCGTCGACAAGCTCGTATCCAAGgtaggtaccc ... tgtcgtgcagTTCCCGGACACCAATTTCATCGTGATGCTGTTCCACTACGACGGCGAGGTG
EST: gi|148932096|gb|EC875475.2|EC875475
EST:     TCCCCGTCGGCATCAAGCAGAAGGCGATCGTCGACAAGCTCGTATCCAAG                         TTCCCGGACACCAATTTCATCGTGATGCTGTTCCACTACGACGGCGAGGTG
genomic: TCCCCGTCGGCATCAAGCAGAAGGCGATCGTCGACAAGCTCGTATCCAAGgtaggtaccc ... tgtcgtgcagTTCCCGGACACCAATTTCATCGTGATGCTGTTCCACTACGACGGCGAGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactggataggcgatcacctagctgtatcatgtatgctgctctcgtgtcgtgcagTTCCCGGACACCAATTTCATCGTGATGCTGTTCCACTACGACGGCGAGGTGGACGGGTGGCGAGACCTGGAGTGGTCGGGCCGCGCGATCCACGTCGGCG
 agctgac  putative branch site (score: 3)
                                       ctctcgt  putative PPT