1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agcattatcctccattcctcccaaaaatcagcaataataattgttatatgctataaagttgttaatgtacattatcatgttctaatgtctacttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTGTCACTGTTCCTTTGAGAGCTGAGTTCCTTGAAAATGCCCGACTGTTTA
species | Zea mays |
transcript | GRMZM2G038313_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTEST: gi|32928420|gb|CF033232.1|CF033232
genomic: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
EST: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTEST: gi|32928859|gb|CF033671.1|CF033671
genomic: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
EST: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTEST: gi|71333150|gb|DR803609.1|DR803609
genomic: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
EST: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTEST: gi|148943092|gb|EC888146.2|EC888146
genomic: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
EST: CAACAGAAACTCGTGGAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTEST: gi|211376029|gb|FL471755.1|FL471755
genomic: CAACAGAAACTCGTGGAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
EST: GAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTGGAAGAGGGAAATTTTEST: gi|32929145|gb|CF033957.1|CF033957
genomic: GAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
EST: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTEST: gi|71318806|gb|DR796164.1|DR796164
genomic: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
EST: CAGAAACTCGTGGAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTEST: gi|32803563|gb|CD955799.1|CD955799
genomic: CAGAAACTCGTGGAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
EST: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTEST: gi|86467967|gb|DY234337.1|DY234337
genomic: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
EST: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAG GTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
genomic: TCAACTATGATTTTGATGGTGCTCAACAGAAACTCGTGGAGTGTGAGCAGgtaacttcga ... acttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTT
atatgctataaagttgttaatgtacattatcatgttctaatgtctacttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTGTCACTGTTCCTTTGAGAGCTGAGTTCCTTGAAAATGCCCGACTGTTTA
ttctaat putative branch site (score: 183)
tctacttttct CT-rich tract
tataaagttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcattatcctccattcctcccaaaaatcagcaataataattgttatatgctataaagttgttaatgtacattatcatgttctaatgtctacttttctagGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGGGAAATTTTGTCACTGTTCCTTTGAGAGCTGAGTTCCTTGAAAATGCCCGACTGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - -ccattcc
- - - - - - - - - - - - - atcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc