1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttacaattctgttttacaaattcctttgtcaattcaagctgtttggttttggttttctgtgtctctctttttcacactcgatgctcatctaattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
species | Zea mays |
transcript | GRMZM2G038126_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAAGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|32803133|gb|CD955369.1|CD955369
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|32836399|gb|CD976077.1|CD976077
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|4321029|gb|AI467692.1|AI467692
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|4646635|gb|AI491464.2|AI491464
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|19351524|gb|BM896056.1|BM896056
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|33092922|gb|CF052916.1|CF052916
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|4966643|gb|AI691499.1|AI691499
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: NAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|32835304|gb|CD974982.1|CD974982
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|60398034|gb|DN230850.1|DN230850
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|5608000|gb|AI901667.1|AI901667
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|32908277|gb|CF013090.1|CF013090
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|78112286|gb|DV530680.1|DV530680
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|6194636|gb|AW146740.1|AW146740
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGGGACGAGGTTGATTTGGAAGACTATEST: gi|6022227|gb|AW067155.1|AW067155
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|32837433|gb|CD977111.1|CD977111
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|22490303|gb|BU050226.1|BU050226
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: CGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGANCCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|4314880|gb|AI444677.2|AI444677
genomic: CGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|6695790|gb|AW288898.1|AW288898
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: GCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|32850236|gb|CD989917.1|CD989917
genomic: GCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|5005873|gb|AI711935.1|AI711935
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCATGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|32837757|gb|CD977435.1|CD977435
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|5081176|gb|AI738333.1|AI738333
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|60355468|gb|DN222441.1|DN222441
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|148947210|gb|EC892558.2|EC892558
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|149051875|gb|EE156005.2|EE156005
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|4804079|gb|AI665945.1|AI665945
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|89246893|gb|DY618679.1|DY618679
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|32835786|gb|CD975464.1|CD975464
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|5361046|gb|AI795661.1|AI795661
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTTTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|87153030|gb|DY397819.1|DY397819
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|148931877|gb|EC877341.2|EC877341
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|24769170|gb|CA404299.1|CA404299
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|211249737|gb|FL399213.1|FL399213
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|6342662|gb|AW165486.1|AW165486
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|211331026|gb|FL444742.1|FL444742
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|149064642|gb|EE286516.2|EE286516
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: GTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATEST: gi|18964972|gb|BM661316.1|BM661316
genomic: GTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
gttttggttttctgtgtctctctttttcacactcgatgctcatctaattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
atctaat putative branch site (score: 3)
ttcttc CT-rich tract
atctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacaattctgttttacaaattcctttgtcaattcaagctgtttggttttggttttctgtgtctctctttttcacactcgatgctcatctaattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT