1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagtgacatatcttcaagaaaaccattatttctggcgtttttctcagtttgtaccactgtttggcagtatggttcactaaacttacctgttgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGTTAGTGGGAAGAGTGAAACCAAGGCACCAGCACCACCAAGCAGTAGTAAC
species | Zea mays |
transcript | GRMZM2G038066_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAG GAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGTEST: gi|60351395|gb|DN218368.1|DN218368
genomic: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAGgttagttttc ... tgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGT
EST: TCTGTTGCATTTTAC-TCGGTGCTCGATTAGGTTTCAATAAAAATGACAG GAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGTEST: gi|78104974|gb|DV523392.1|DV523392
genomic: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAGgttagttttc ... tgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGT
EST: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAG GAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGTEST: gi|78023453|gb|DV491840.1|DV491840
genomic: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAGgttagttttc ... tgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGT
EST: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAG GAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGTEST: gi|211270508|gb|FL357031.1|FL357031
genomic: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAGgttagttttc ... tgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGT
EST: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAG GAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGTEST: gi|211465755|gb|FL467271.1|FL467271
genomic: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAGgttagttttc ... tgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGT
EST: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAG GAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGTEST: gi|60348743|gb|DN215716.1|DN215716
genomic: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAGgttagttttc ... tgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGT
EST: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAG GAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGT
genomic: TCTGTTGCATTTTACTTCGGTGCTCGATTCGGTTTCAATAAAAATGACAGgttagttttc ... tgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGT
agtttgtaccactgtttggcagtatggttcactaaacttacctgttgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGTTAGTGGGAAGAGTGAAACCAAGGCACCAGCACCACCAAGCAGTAGTAAC
aacttac putative branch site (score: 49)
taaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgacatatcttcaagaaaaccattatttctggcgtttttctcagtttgtaccactgtttggcagtatggttcactaaacttacctgttgttatgcagGAAGCGCCTCTACAGTTTGATTGATGATCTTCCCATGGCTTTTGAAATTGTTAGTGGGAAGAGTGAAACCAAGGCACCAGCACCACCAAGCAGTAGTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - -aagaaaa
- - - - - - - - - - - - - - -ttctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccactgt