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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatagatctgtgatacacatcattattactgtggcctgtccaaagatgcaaatcatgattctatagctctacccgaacttgtttttcttgaattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG

Basic information

species Zea mays
transcript GRMZM2G037698_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037698_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 3'ss of exon 2
aatagatctgtgatacacatcattatt--actgtggcctgtccaaagatgcaaatcatgattc--tatagctctacccgaacttgtttttcttgaattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG
  | ||| | ||  ||| || || ||   |||                  |  ||||||||||    |||||||  |   |    |    | ||  |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| || || |||
-cttgattt-tgccacaaataatcatggaactaaaaatgtcttgtgagaacccatcatgattcaccctagctctcactagaacaatac--catggcttttacagGAGTGGGATGCTATCATGCTTTCTAGTTTTGCTTTGGAGCAGCAGCTTCATACAGCAAGACAAGAACTTAGTCATGCGCTATATCAG

upper sequence: GRMZM2G037698_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 4
aatagatctgtgatacacatcattattactgtggcctgtccaaagatgcaaatcatgattctatag--ctctacccgaacttgtttttcttgaat--tttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG
 | | || |  || |  | |   |||   ||| | ||       | || |||  |  ||| | |||   ||  |   |  |  |||   |||  |  |||| |||| |||||||   | ||||| ||||||||||| |||||||| ||  | ||||||||||||||||| || ||||||||  | || |||
-aaatattta-gacatgcttagatat--gtgtaggcttctttctgttgaaaaaaacaattatttaggcttccgcataagatgatttggtttgcctaatttgtagGAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGACAAGAGCTGAGTCATGCTTTGTATCAG

upper sequence: GRMZM2G037698_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G26870.1 (Glycine max), 3'ss of exon 4
aatagatctgtgatacacatcattattactgtggcctgtccaaagatgcaaatcatgattctatag--ctctacccgaacttgtttttcttgaat--tttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG
   | || | | | |||       ||   ||| | ||       | || |||   | ||| | |||   || ||  ||  |  |||   |||  |  |||| |||| |||||||   | ||||| ||||||||||| |||||||| ||  | |||||||||||||| || || |||||||| || || |||
---aaatattt-agacatgcttagatgtgtgtagtcttctttctgttgaaaaaagtaattatttaggcttccacttgagatgatttggtttgcctaatttgtagGAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGACAGGAGCTGAGTCATGCTCTGTATCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26457390|gb|CA828973.1|CA828973
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|149082488|gb|EE171681.2|EE171681
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211398014|gb|FL052437.1|FL052437
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211395393|gb|FL052425.1|FL052425
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|31350321|gb|CD434678.1|CD434678
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211398013|gb|FL052436.1|FL052436
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211392771|gb|FL052416.1|FL052416
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211502075|gb|FL052463.1|FL052463
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211502066|gb|FL052454.1|FL052454
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTTGCTTTGGAGCAGCAGCTACA
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTT-GCTTTGGAGCAGCAGCTACA
EST: gi|211395397|gb|FL052429.1|FL052429
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTTGCTTTG
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTT-GCTTTG
EST: gi|211392764|gb|FL052409.1|FL052409
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTA-TTTTGCTTTGGAAGCAGCAGCTACA
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGA-GCAGCAGCTACA
EST: gi|211124460|gb|FL005599.1|FL005599
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211504415|gb|FL052464.1|FL052464
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211506780|gb|FL052483.1|FL052483
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211390140|gb|FL052400.1|FL052400
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211395402|gb|FL052434.1|FL052434
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211392763|gb|FL052408.1|FL052408
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211504416|gb|FL052465.1|FL052465
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACA
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACA
EST: gi|211504420|gb|FL052469.1|FL052469
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGTTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211398015|gb|FL052438.1|FL052438
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211392766|gb|FL052411.1|FL052411
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|148956938|gb|EC902874.2|EC902874
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|148987120|gb|EE030948.2|EE030948
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211504425|gb|FL052474.1|FL052474
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTYTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGGCTTTGGAGCAGCAGCTACA
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTG-CTTTGGAGCAGCAGCTACA
EST: gi|211395400|gb|FL052432.1|FL052432
EST:     GGCCTTTGCAGGCTGCAASSATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTG
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTG
EST: gi|60397274|gb|DN230090.1|DN230090
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211504427|gb|FL052476.1|FL052476
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211392769|gb|FL052414.1|FL052414
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211395398|gb|FL052430.1|FL052430
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211504417|gb|FL052466.1|FL052466
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211502064|gb|FL052452.1|FL052452
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211398012|gb|FL052435.1|FL052435
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211392768|gb|FL052413.1|FL052413
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211125228|gb|FL005601.1|FL005601
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|148940045|gb|EC884788.2|EC884788
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211506776|gb|FL052479.1|FL052479
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAG
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAG
EST: gi|211506777|gb|FL052480.1|FL052480
EST:     GCCTTTGCAGGCTGCAAGCATTTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTT-CTAATTTTGCTTTGGAGCAGCATGCTACA
genomic: GCCTTTGCAGGCTGCAAGCATT-CCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCA-GCTACA
EST: gi|211125241|gb|FL005614.1|FL005614
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGNGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211502068|gb|FL052456.1|FL052456
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211502063|gb|FL052451.1|FL052451
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211504428|gb|FL052477.1|FL052477
EST:     GGCCTTTGCAGGCTGCAASCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211506781|gb|FL052484.1|FL052484
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211395391|gb|FL052423.1|FL052423
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211392761|gb|FL052406.1|FL052406
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211506782|gb|FL052485.1|FL052485
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTNCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211395401|gb|FL052433.1|FL052433
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTCTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211504424|gb|FL052473.1|FL052473
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211395395|gb|FL052427.1|FL052427
EST:     GGCCTTTGCAGTCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211392774|gb|FL052419.1|FL052419
EST:     GGCCTTTGCAGTCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211398022|gb|FL052445.1|FL052445
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211502071|gb|FL052459.1|FL052459
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTC
EST: gi|211502073|gb|FL052461.1|FL052461
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|26456415|gb|CA827998.1|CA827998
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211502067|gb|FL052455.1|FL052455
EST:     GCCTTTGCAGGCTGCAAGCATTCCAGGACTCCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTGTGNAGCAGCAGCTACAC
genomic: GCCTTTGCAGGCTGCAAGCATTCCAGGACTCC-TTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211506778|gb|FL052481.1|FL052481
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211398023|gb|FL052446.1|FL052446
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTC
EST: gi|31354887|gb|CD439244.1|CD439244
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211398021|gb|FL052444.1|FL052444
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211125235|gb|FL005608.1|FL005608
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211395390|gb|FL052422.1|FL052422
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAA
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAA
EST: gi|149095787|gb|EE181433.2|EE181433
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|148958621|gb|EC904872.2|EC904872
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211502065|gb|FL052453.1|FL052453
EST:     GGCCTTTGCAGGCTGCAASSATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211504418|gb|FL052467.1|FL052467
EST:     GGCCTTTGCAGTCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211398020|gb|FL052443.1|FL052443
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211125229|gb|FL005602.1|FL005602
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGAGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACCC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
EST: gi|211392773|gb|FL052418.1|FL052418
EST:     GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC                         GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC
genomic: GGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAACgtaaggggtc ... aattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcaaatcatgattctatagctctacccgaacttgtttttcttgaattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG
                                    tttttcttgaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatagatctgtgatacacatcattattactgtggcctgtccaaagatgcaaatcatgattctatagctctacccgaacttgtttttcttgaattttgcagGAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC