Sequence
atgc intronic sequence ATGC exonic sequence...tgctgtctgatagactgatactgcagcagcctttaaaacagcaacatctgttggtagacagtttcatctgtagaactaatacggttcatctaatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCAATGCTTCAGGGCCGCTTCCCTATGAGGGGTCTATATCAGGCCTTAGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G037585_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g71000.1 (Oryza sativa), 3'ss of exon 4
---tgctgtctgatagactgatactgcagcagcctttaaaacagcaacatctgttggtagacagtttcatct-gtagaactaatacggttcatctaatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCAATGCTTCAGGGCCGCTTCCCTATGAGGGGTCTATATCAGGCCTTAGCTG
| | ||| | | | | || ||| ||| | | || | || | || |||| ||| || | | | || ||||| ||||||| | |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||| |||||||
aatttgtaaatga-aaccagtttctaatgcaatcttaattgaaaaaaaaact--tcgtggacatttttattttggataatcaatacatttcatctg-tttgcagGCTCGTCCACTATTCAAGGACCGCAGGAAGTTCCCTAAAATGGCTGATCCAATGCTCCAAGGTCGCTTCCCTATGAGGGGTCTGTATCAGGCTTTAGCTG
upper sequence: GRMZM2G037585_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv05s0020g01770.t01 (Vitis vinifera), 3'ss of exon 4
----------------------------------------------------tgctgtctgatagactgatactgcagcagcctttaaaacagcaacatctgttggtagacag------tttcatctgtagaactaatacggttcatct-aatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCAATGCTTCAGGGCCGCTTCCCTATGAGGGGTCTATATCAGGCCTTAGCTG
| || | | | | | | | | || | | || | || || ||| | | | | | || | | || | |||||| |||| || ||||| ||||||||||| ||||| |||||||| |||||||||||| | || || ||||| | || ||| | || || || || || |||| |
gtaagtgtttcttttctgcattttcccaatttattggcttttattgtactttttctttttaaca-atttccatgaaggtgatgcttgcatatactcaatttattattatacaagatttctcttctttttccctttattttgtgggatatgaatctgtagGCACGACCACTTTTCAAGGACCGTAGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAAGGCCGTTATCCAATGCGAGGACTTTACCAAGCTCTAGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|40336660|gb|CK370730.1|CK370730EST: AAGCAATTGACAACACCAAGACCCAAGGGGAGCAAAACCTAGTGGCATGG GCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCA
genomic: AAGCAATTGACAACACCAAGACCCAAGGGGAGCAAAACCTAGTGGCATGGgtatgtttct ... taatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctgttggtagacagtttcatctgtagaactaatacggttcatctaatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCAATGCTTCAGGGCCGCTTCCCTATGAGGGGTCTATATCAGGCCTTAGCTG
ttcatct CT-rich tract
aactaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgctgtctgatagactgatactgcagcagcctttaaaacagcaacatctgttggtagacagtttcatctgtagaactaatacggttcatctaatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCAATGCTTCAGGGCCGCTTCCCTATGAGGGGTCTATATCAGGCCTTAGCTG
tgctgtc
- - - - - - - - - - ctgcagc
- - - - - - - - - - - - - - - - - - - cagcaac
- - - - - - - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatc