1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcttccccctattttgggtttatctttgttttgttgtgaaacttcaaattcttcattgtttcaattctattttgttgcttggtgcagGCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAGCCAGCTGCTTCTCTAGATGGCCATAAGCTTGCTGTTGTTTCATTGATAG
species | Zea mays |
transcript | GRMZM2G037200_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAA GCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAGEST: gi|31997696|gb|CD661719.1|CD661719
genomic: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAAgtaagcttcc ... cttggtgcagGCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAG
EST: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAA GCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAGEST: gi|26559549|gb|CA831784.1|CA831784
genomic: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAAgtaagcttcc ... cttggtgcagGCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAG
EST: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAA GCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAGEST: gi|22715752|gb|BU197942.1|BU197942
genomic: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAAgtaagcttcc ... cttggtgcagGCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAG
EST: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAA GCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAGEST: gi|22819542|gb|BU499632.1|BU499632
genomic: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAAgtaagcttcc ... cttggtgcagGCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAG
EST: AGGCTATGCACTCCGCGGT-GCCAGTGAGTTACTCTTTGCTGCAACACAA GCTGGGAGGATTTTEST: gi|29576814|gb|CB616926.1|CB616926
genomic: AGTCTATGCACTC-GCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAAgtaagcttcc ... cttggtgcagGCTGGGAGGATTTT
EST: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAA GCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAGEST: gi|87157418|gb|DY402207.1|DY402207
genomic: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAAgtaagcttcc ... cttggtgcagGCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAG
EST: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAA GCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAG
genomic: AAGTCTATGCACTCGCCGTTGCCAGTGAGTTACTCTTTGCTGCAACACAAgtaagcttcc ... cttggtgcagGCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAG
gttgtgaaacttcaaattcttcattgtttcaattctattttgttgcttggtgcagGCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAGCCAGCTGCTTCTCTAGATGGCCATAAGCTTGCTGTTGTTTCATTGATAG
tttcaattctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttccccctattttgggtttatctttgttttgttgtgaaacttcaaattcttcattgtttcaattctattttgttgcttggtgcagGCTGGGAGGATTTTAGCATGGAGATTTAGTGCCGCAACTAACTGTTTTGAGCCAGCTGCTTCTCTAGATGGCCATAAGCTTGCTGTTGTTTCATTGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT