1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agctcgtactggcccaacataactttatgggttaatatagcttttcttttttctttttatttgttaagtaaggctgatgatgttgtataactactgacagGTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAATTCAGACTTTCGTTTGGGTTCTTATACGAACAGGAATTGTCCTGTGTGA
species | Zea mays |
transcript | GRMZM2G036902_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAG GTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAAEST: gi|33092496|gb|CF052490.1|CF052490
genomic: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAGgtatgctgcc ... ctactgacagGTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAA
EST: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAG GTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAAEST: gi|50331608|gb|CO526734.1|CO526734
genomic: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAGgtatgctgcc ... ctactgacagGTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAA
EST: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAG GTCGGCATGGACATCCCCAGGAAATGTGTATGGGTTTTGATTGATTACTAAEST: gi|32834165|gb|CD973843.1|CD973843
genomic: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAGgtatgctgcc ... ctactgacagGTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAA
EST: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAG GTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAAEST: gi|71762324|gb|DR960261.1|DR960261
genomic: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAGgtatgctgcc ... ctactgacagGTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAA
EST: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAG GTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAAEST: gi|37397514|gb|CF636057.1|CF636057
genomic: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAGgtatgctgcc ... ctactgacagGTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAA
EST: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAG GTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAA
genomic: CATAATCTTTCAAATGAAGTGTGCCTGGCAATTTCTTTCCATGGCTTAAGgtatgctgcc ... ctactgacagGTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAA
cttttttctttttatttgttaagtaaggctgatgatgttgtataactactgacagGTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAATTCAGACTTTCGTTTGGGTTCTTATACGAACAGGAATTGTCCTGTGTGA
gtataac putative branch site (score: 81)
ttctttttatttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctcgtactggcccaacataactttatgggttaatatagcttttcttttttctttttatttgttaagtaaggctgatgatgttgtataactactgacagGTCGGCATGGACATCACCAGGAAATGTGTATGGGTTTTGATTGATTACTAATTCAGACTTTCGTTTGGGTTCTTATACGAACAGGAATTGTCCTGTGTGA
- - - tactggc
- - - - - - - caacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgta