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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacttcaggttgtccctttgcattttgtgttttacttggttgtcaatttgaattctggcttttactttgccactatgaattctgccttatgcactggatactaacctgcagGAAAATATAAAAGCTCTCACTATCTATGTTATTGAGTCTTTCTGGTATGAACTTGTCAAGTTTGAACACTTCGGGAGTATTCAGGCCTTCAAACTCAAGT

Basic information

species Zea mays
transcript GRMZM2G035395_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035395_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g23590.1 (Oryza sativa), 3'ss of exon 21
gtatgacttcaggttgtccctttgcattttgtgttttacttggttgtcaatttgaattctggcttttactttgccactatgaattctgccttatgcactggatactaacctgcagGAAAATATAAAAGCTCTCACTATCTATGTTATTGAGTCTTTCTGGTATGAACTTGTCAAGTTTGAACACTTCGGGAGTATTCAGGCCTTCAAACTCAAGT
                      | ||  ||  |   |||  ||| ||  || ||       | ||||  |||||  | | |||||||  |||                  ||||||||  | |||||   || | ||| ||||  | |||||| || ||| || ||||| | |||||||||||||| ||||||||||||||||| | ||| ||||
---------------------gtacacgttcagaactaccaggtagttgatatg-------gttttttgtttgct-caaagaattctttctt-----------------ttgcagGAAGGTCTAAAACAACTTATTATATATGCCAATGAGTCCTTTTGGGATCAACTTATGAAGTTTGAACACTTTGGGAGTATTCAGGCCTTTAGACTTAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcttttactttgccactatgaattctgccttatgcactggatactaacctgcagGAAAATATAAAAGCTCTCACTATCTATGTTATTGAGTCTTTCTGGTATGAACTTGTCAAGTTTGAACACTTCGGGAGTATTCAGGCCTTCAAACTCAAGT
                                          tactaac  putative branch site (score: 0)
                 tatgaatt  TA-rich tract