1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtcgcgtacgttcctgctggccacggaccgaaggtgaaaggttgttgctggtttactgataggagacaaccatgtctggtctctgcagATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCCTCCAGTCCTCCACCCACCGCGCAGTAGTAGCTGCGGAAACAGCCCATGC
species | Zea mays |
transcript | GRMZM2G034876_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCCATGGCGTCCTCCGACTTCTCCGTGGCCAGCTCCCAGTCGCCCAACG ATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCCEST: gi|60337197|gb|DN204170.1|DN204170
genomic: ACCCATGGCGTCCTCCGACTTCTCCGTGGCCAGCTCCCAGTCGCCCAACGgtgagtcgcg ... gtctctgcagATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCC
EST: ACCCATGGCGTCCTCCGACTTCTCCGTGGCCAGCTCCCAGTCGCCCAACG ATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCCEST: gi|60358634|gb|DN225607.1|DN225607
genomic: ACCCATGGCGTCCTCCGACTTCTCCGTGGCCAGCTCCCAGTCGCCCAACGgtgagtcgcg ... gtctctgcagATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCC
EST: ACCCATGGCGTCCTCCGACTTCTCCGTGGCCAGCTCCCAGTCGCCCAACG ATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCCEST: gi|60345061|gb|DN212034.1|DN212034
genomic: ACCCATGGCGTCCTCCGACTTCTCCGTGGCCAGCTCCCAGTCGCCCAACGgtgagtcgcg ... gtctctgcagATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCC
EST: ACCCATGGCGTCCTCCGACTTCTCCGTGGCCAGCTCCCAGTCGCCCAACG ATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCCEST: gi|166519758|gb|EG213018.1|EG213018
genomic: ACCCATGGCGTCCTCCGACTTCTCCGTGGCCAGCTCCCAGTCGCCCAACGgtgagtcgcg ... gtctctgcagATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCC
EST: CCCAGTCGCCCAACG ATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTNTCCCC
genomic: CCCAGTCGCCCAACGgtgagtcgcg ... gtctctgcagATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCC
gtgaaaggttgttgctggtttactgataggagacaaccatgtctggtctctgcagATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCCTCCAGTCCTCCACCCACCGCGCAGTAGTAGCTGCGGAAACAGCCCATGC
tactgat putative branch site (score: 2)
tctctgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcgcgtacgttcctgctggccacggaccgaaggtgaaaggttgttgctggtttactgataggagacaaccatgtctggtctctgcagATGACTAATGGTGCGTGGATCGTCGCGTTCTGGCCCTTTGTCTGTCTTCCCTCCAGTCCTCCACCCACCGCGCAGTAGTAGCTGCGGAAACAGCCCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC