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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaacatcatgactgcggaataactcgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG

Basic information

species Zea mays
transcript GRMZM2G034848_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034848_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os09g20820.1 (Oryza sativa), 3'ss of exon 4
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaacatcatgactgcggaataactcgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
                              |||| ||     |  | |||  | ||||   |  ||| ||     |         |   | | |||| | || |||| ||||  | |    | | || || |         |||| ||||| || || ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
------------------------------gtaccatcaaattcctattg--ttcttctgataatgatcagttcta---------agtccaatataaacatggactgcaaaatgacaaaaatatattcaactg--------tttttcagGTTAATCAAATTGGCACTGTCACTGAATCAATTCAAGCTGCTCTTGATTCAAAAGCTGCTGGTTGGGGCGTGATGGTCAGCCACAGGAGTGGGGAAACGG

upper sequence: GRMZM2G034848_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA04G24920.1 (Glycine max), 3'ss of exon 3
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgc-tgaacatcatgactgcggaataact-cgagataagcttgcactgaaaaactaaatgtc-tttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
                                                   |  |  | | ||  |  ||| | || || |   |||  |    | | |  || || |   ||   |    || ||||||     | ||        | ||||| |||||||||||||| || || ||||| ||||| ||||| || || ||||| ||||| |||||||||||  |||| || ||  | ||||| || || |
---------------------------------------------------aaacaccaactgaatttacagcttg-cttcaagatagttgttggctgaatttacagttgcaattaatgcttcatttgttttgtgttgtccattgactgcagGTTAACCAGATTGGTACAGTGACCGAATCTATTCAGGCTGCACTTGACTCAAAGGCTGCAGGTTGGGGTGTAGTGGTTAGTCATCGGAGTGGCGAGACTG

upper sequence: GRMZM2G034848_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA06G23080.1 (Glycine max), 3'ss of exon 4
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaaca--tcatgactgcggaataactcgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgcctt--ttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
                                                 ||||| |  ||   || | ||        ||||    |  ||  |  ||    || | | ||    | | |   || |||     || | | |  |   | ||||| ||||| |||||||| || |||||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| || ||  | ||||||||||| |
-------------------------------------------------gcatcttatcaaaactaatcaaacaccagctgcatgttggctgaatttacagctgtaattaa----tgattcctttggttttttctgttatccaatgactgcagGTTAACCAAATTGGTACAGTGACTGAATCTATTCAGGCTGCACTTGACTCAAAGGCTGCAGGTTGGGGTGTCATGGTTAGTCATCGGAGTGGTGAAACTG

upper sequence: GRMZM2G034848_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA18G22780.1 (Glycine max), 3'ss of exon 5
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaacatcatgactgcggaataact-cgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttc----cagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
                                                   |  |   | |   | | || | || ||     |||  |    | | |  || ||     ||  | ||| |||| |||    |||   || | |||     ||||| |||||||||||||| || || ||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| || ||  | ||||| || || |
-------------------------------------------------aaacaccagctgaattta-cagcttg-ctttaagatagttgttggctgaatttacagctgcaa--ttaat-tcttcgtttgttttgtgttgtcctttgactgcagGTTAACCAGATTGGTACAGTGACCGAATCTATTCAGGCTGCACTTGACTCAAAGGCTGCAGGTTGGGGTGTCATGGTTAGTCATCGGAGTGGCGAGACTG

upper sequence: GRMZM2G034848_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT1G74030.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaacatcatgactgcggaataactcgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
                 ||  | |||     ||   |||    | ||||  |  ||  || | ||  | | |||   |  |  | ||| |  | ||   ||| |   | ||  | ||| | |||||   ||||  ||    |||  ||||| ||||||||||| || |||||||| ||||||||||| || || || ||||||||||| || |||||||||||||| || ||||| ||||| || || |
--------------gtaaaaataaaagtttttatattattttctcttttctaatct--caattctctagaccat---tttgacaaaacccccgtta---ttggag-aagaatttcaatttgtttgt---aattcatgg---tttcacagGTTAACCAGATTGGGACAGTCACTGAGTCAATTCAAGCAGCACTTGACTCAAAAGCTGCAGGCTGGGGTGTGATGGTTAGTCACAGGAGTGGCGAGACAG

upper sequence: GRMZM2G034848_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv17s0000g04540.t01 (Vitis vinifera), 3'ss of exon 4
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaacatcatgactgcggaataactcgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
                                      |   |  |  |  ||  ||| |  | ||| ||||||  || |  |       || |||   || || ||   | |   || |  |  | | | ||          || ||||| |||||||| || || || |||||||| ||||||||||| || || || |||||||| || ||||||||||||||||| ||| | ||||||||||| |
--------------------------------------tagttactggta-attgttctatggttgatcatcatatctcctaa------tgaaata---tttca-tgttgatcctgatcttatcttaatatttacccaaatgattgcagGTTAACCAGATAGGCACCGTGACTGAATCCATTCAAGCTGCACTAGACTCTAAAGCTGCAGGATGGGGTGTGATGGTCAGTCACCGGAGTGGTGAAACAG

upper sequence: GRMZM2G034848_T01 (Zea mays), 3'ss of exon 4
lower sequence: PP1S76_97V6.1 (Physcomitrella patens), 3'ss of exon 3
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaacatcatgactgcggaataactcgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
      ||  | |     |||  | | |      |||     |   |     |  |    |   | ||  |   || ||| |  | | |  || | |  ||  |     ||| ||||||||||  ||     |    ||  |    ||||| || || || ||  |||| || || || |||||||||||||||||||| || || || ||||||||||| |||||||||||| ||||||| || || |
----gtatgctgttcgtgattccagaagacaccagattatgttagctccattttatcttcgctttaaatttagagaatgctgtttta-tgaagctca--ttaaagcatgaaagtaaatgtcttcattttttctaac-tgtatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCAAGGCAGCCGGTTGGGGTGTTATGGTCAGCCACCGAAGTGGAGAGACTG

upper sequence: GRMZM2G034848_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ26490 (Selaginella moellendorffii), 3'ss of exon 5
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaacatcatgactgcggaataactcgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
                                                                         | |   |||  |  |     || |  |  || || ||    |    | ||| ||    ||  |  || |||| ||||| || ||| | ||  | || |||||||| || ||||| ||  ||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||
------------------------------------------------------------------------gtaagcacggtgtcgccttccatcatttctca-tggaatcgaatccttttttttttcttttctttcgctttttgcagGTGAATCAGGTCGGCTCCGTGACTGAATCCATCCAAGCAGCTTTGGATTCAAAAGCTGCTGGATGGGGTGTTATGGTGAGCCACAGAAGTGGAGAGACCG

upper sequence: GRMZM2G034848_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ26799 (Selaginella moellendorffii), 3'ss of exon 4
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaacatcatgactgcggaataactcgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
                                                                         | |   |||  |  |     || |  |  || || || |  |    | ||| ||    ||  |  || |||| ||||| || ||| | ||  | || |||||||| || ||||| ||  ||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||
------------------------------------------------------------------------gtaagcacggtgtcgccttccatcatttctca-tggaatagaatccttttttttttcttttctttcgctttttgcagGTGAATCAGGTCGGCTCCGTGACTGAATCCATCCAAGCAGCTTTGGATTCAAAAGCTGCTGGATGGGGTGTTATGGTGAGCCACAGAAGTGGAGAGACCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7216522|gb|AW562644.1|AW562644
EST:     GAATAGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|32867724|gb|CF007406.1|CF007406
EST:     GAATAGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|91869806|gb|EB400550.1|EB400550
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTATTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|149086059|gb|EE175588.2|EE175588
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTATTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|71446085|gb|DR827135.1|DR827135
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|71445334|gb|DR826384.1|DR826384
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTATTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|211293097|gb|FL433992.1|FL433992
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|7304518|gb|AW600457.1|AW600457
EST:     GAATAGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|148965075|gb|EE015894.2|EE015894
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTATTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|101401519|gb|EB822439.1|EB822439
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTATTAAAG                         GTCAACCAGATTGGTATTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|89250270|gb|DY622056.1|DY622056
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTATTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|60348134|gb|DN215107.1|DN215107
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|211133333|gb|FL444548.1|FL444548
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
EST: gi|211242539|gb|FL481663.1|FL481663
EST:     GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAG                         GTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA
genomic: GAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 42 (downstream exon)
Score: 15

AGTTGGTATCCAAATTGTGGGTGATGATTTACTTGTCACAAACCCAAAACGAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 14

AGTTGGTATCCAAATTGTGGGTGATGATTTACTTGTCACAAACCCAAAACGAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 10

AGTTGGTATCCAAATTGTGGGTGATGATTTACTTGTCACAAACCCAAAACGAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG


Block sizes: 44 (upstream exon), 48 (downstream exon)
Score: 16

AGTTGGTATCCAAATTGTGGGTGATGATTTACTTGTCACAAACCCAAAACGAATTGCAGACGCTATTGACAGGAAGGCTTGCAATGCTCTTTTACTAAAGgtaaccattt ... ccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG
                aactaaa  putative branch site (score: 16)
                                           tgccttttcc  putative PPT
                         tctttgttaaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaccattttctaaacaatttgaaatggagtacgatatgcctttttttgcatccttccagtgctgaacatcatgactgcggaataactcgagataagcttgcactgaaaaactaaatgtctttgttaaaattggtgtgccttttccagGTCAACCAGATTGGTACTGTCACTGAATCAATTCAAGCTGCCCTGGATTCAAAAGCTGCTGGTTGGGGTGTGATGGTCAGCCACAGAAGTGGTGAAACCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT