1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctttacctagaattcatattgttcgtgacagacctcaaaaatttaaaattctgtatttggtcttaaactgtctgcttttctattacccttgttcttccagCAAGCTAGCTGCACATGAGGTCCAGAAAAAGCAAGAGAAGGAAGAGGAAGAGGAGAAGCTAATTCTGCAGAAGGCTAAGGAGTTGGATGCCTTTGACCAG
species | Zea mays |
transcript | GRMZM2G034791_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGTGCATCCTCGAGTGCCTCCTCTACCAGAAGAAGGACATCAAGCG CAAGCTAGCTGCACATGAGGTCCAGAAAAAGCAAGAGAAGGAAGAGGAAGA
genomic: AAGGAGTGCATCCTCGAGTGCCTCCTCTACCAGAAGAAGGACATCAAGCGgtaggcggca ... gttcttccagCAAGCTAGCTGCACATGAGGTCCAGAAAAAGCAAGAGAAGGAAGAGGAAGA
aaattctgtatttggtcttaaactgtctgcttttctattacccttgttcttccagCAAGCTAGCTGCACATGAGGTCCAGAAAAAGCAAGAGAAGGAAGAGGAAGAGGAGAAGCTAATTCTGCAGAAGGCTAAGGAGTTGGATGCCTTTGACCAG
tctgcttttctattac CT-rich tract
ttttctatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttacctagaattcatattgttcgtgacagacctcaaaaatttaaaattctgtatttggtcttaaactgtctgcttttctattacccttgttcttccagCAAGCTAGCTGCACATGAGGTCCAGAAAAAGCAAGAGAAGGAAGAGGAAGAGGAGAAGCTAATTCTGCAGAAGGCTAAGGAGTTGGATGCCTTTGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtctg