1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagccatctgattagctcactagcccgaaattatgttgtttgatcacaactggcaatagctactcggtaatttaatggggctagatgtgtcggattggttggatagGTACACCGGAGTTCATGGCACCGGAGGTGTATGAAGAGGAGTACAACGAGCTGGTGGACATCTACTCGTTTGGAATGTGCGTGCTCGAGATGGTCACCTT
species | Zea mays |
transcript | GRMZM2G034779_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTCGGCCTCGCCGCCATCCTCCGCAAGTCCCACGCTGTCCACTGCGTGG GTACACCGGAGTTCATGGCACCGGAGGTGTATGAAGAGGAGTACAACGAGCEST: gi|71764174|gb|DR962111.1|DR962111
genomic: CCTCGGCCTCGCCGCCATCCTCCGCAAGTCCCACGCTGTCCACTGCGTGGgtaagccatc ... ggttggatagGTACACCGGAGTTCATGGCACCGGAGGTGTATGAAGAGGAGTACAACGAGC
EST: CCTCGGCCTCGCCGCCATCCTCCGCAAGTCCCACGCTGTCCACTGCGTGG GTACACCGGAGTTCATGGCACCGGAGGTGTATGAAGAGGAGTACAACGAGCEST: gi|60349268|gb|DN216241.1|DN216241
genomic: CCTCGGCCTCGCCGCCATCCTCCGCAAGTCCCACGCTGTCCACTGCGTGGgtaagccatc ... ggttggatagGTACACCGGAGTTCATGGCACCGGAGGTGTATGAAGAGGAGTACAACGAGC
EST: CCTCGGCCTCGCCGCCATCCTCCGCAAGTCCCACGCTGTCCACTGCGTGG GTACACCGGAGTTCATGGCACCGGAGGTGTATGAAGAGGAGTACAACGAGC
genomic: CCTCGGCCTCGCCGCCATCCTCCGCAAGTCCCACGCTGTCCACTGCGTGGgtaagccatc ... ggttggatagGTACACCGGAGTTCATGGCACCGGAGGTGTATGAAGAGGAGTACAACGAGC
ggcaatagctactcggtaatttaatggggctagatgtgtcggattggttggatagGTACACCGGAGTTCATGGCACCGGAGGTGTATGAAGAGGAGTACAACGAGCTGGTGGACATCTACTCGTTTGGAATGTGCGTGCTCGAGATGGTCACCTT
atttaat putative branch site (score: 31)
taatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccatctgattagctcactagcccgaaattatgttgtttgatcacaactggcaatagctactcggtaatttaatggggctagatgtgtcggattggttggatagGTACACCGGAGTTCATGGCACCGGAGGTGTATGAAGAGGAGTACAACGAGCTGGTGGACATCTACTCGTTTGGAATGTGCGTGCTCGAGATGGTCACCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG