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gtactcactcttgcttttcaaaggcagacagtttgtagttgttgcttttccagtttcaacactcaacataagatgctcattggttcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGAACCGTATCCTCTGGATATGAGAGGAGAACTAGATGACACAGCTGCTTT
species | Zea mays |
transcript | GRMZM2G034083_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|13150055|gb|BG320377.1|BG320377
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|148986293|gb|EE030028.2|EE030028
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|149110454|gb|EE190425.2|EE190425
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|211020101|gb|FL063974.1|FL063974
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: TAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|149070778|gb|EE159189.2|EE159189
genomic: TAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|149000525|gb|EE037708.2|EE037708
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCCTTCACCTTGGTAAATGGTGEST: gi|7238111|gb|AW573333.1|AW573333
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|31356652|gb|CD441009.1|CD441009
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|31353311|gb|CD437668.1|CD437668
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|13150060|gb|BG320382.1|BG320382
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CGCACAAAGATAGGTGGTTTCATTWAGAGCTGTATTTTCTGTTTCCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|211020099|gb|FL063972.1|FL063972
genomic: CGCACAAAGATAGGTGGTTTCATT-AGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CGCNACAA-GATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTGGGATTTCTCATTTCTTGAGATGACCCCATTCAC-TTGGGTAAATGGTEST: gi|148947869|gb|EC893362.2|EC893362
genomic: CGC-ACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGG-TAAATGGT
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATEST: gi|148958422|gb|EC904655.2|EC904655
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAAT
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|31355046|gb|CD439403.1|CD439403
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|78103681|gb|DV522109.1|DV522109
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|148951643|gb|EC897387.2|EC897387
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGEST: gi|9566469|gb|BE475978.1|BE475978
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|67042517|gb|CO468772.1|CO468772
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTTGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|32859101|gb|CD998782.1|CD998782
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|148955951|gb|EC901669.2|EC901669
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|33104123|gb|CF064083.1|CF064083
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|149113031|gb|EE295802.2|EE295802
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|148935016|gb|EC879057.2|EC879057
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|37401585|gb|CF638160.1|CF638160
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGG-TTCATTAGAGCTGTA-TTTCTG-TTTCCAAG AC-TGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGEST: gi|67016541|gb|CO445290.1|CO445290
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
EST: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAG ACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
genomic: CCGCACAAAGATAGGTGGTTTCATTAGAGCTGTATTTTCTGTTTTCCAAGgtactcactc ... tcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTG
tgttgcttttccagtttcaacactcaacataagatgctcattggttcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGAACCGTATCCTCTGGATATGAGAGGAGAACTAGATGACACAGCTGCTTT
ttcttttgc CT-rich tract
aacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcactcttgcttttcaaaggcagacagtttgtagttgttgcttttccagtttcaacactcaacataagatgctcattggttcttttgcagACTTGGATTTCTCATTTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGAACCGTATCCTCTGGATATGAGAGGAGAACTAGATGACACAGCTGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT