1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtaaatccagttcggtatatttcctgtagacattttttatgtgtttaaacatatattgcagaaaatgttgctgcaaagattcgtgattctggactaatgctacattttatacgagcaactagtctaagatgttacatgttttttttttgaaaacgtggaatggtactgatgtcaaagtccttgcgccgcagGTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGGCTGCCACTGGTGCCACTATCTAAACTGCGTGCCAACATCAAAGTGGAAG
species | Zea mays |
transcript | GRMZM2G033937_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGGEST: gi|211161010|gb|FL476903.1|FL476903
genomic: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGGgtaagtaaat ... tgcgccgcagGTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGG
EST: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGG ATTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGGEST: gi|88753280|gb|DY537421.1|DY537421
genomic: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGGgtaagtaaat ... tgcgccgcagGTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGG
EST: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGGEST: gi|71304368|gb|DR788299.1|DR788299
genomic: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGGgtaagtaaat ... tgcgccgcagGTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGG
EST: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGGEST: gi|149004836|gb|EE039341.2|EE039341
genomic: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGGgtaagtaaat ... tgcgccgcagGTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGG
EST: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGG
genomic: GCGTACCAGTATATTTTGTGGGTTGTGGCACTAGTCTTGCTGTTAGTTGGgtaagtaaat ... tgcgccgcagGTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGG
tgttttttttttgaaaacgtggaatggtactgatgtcaaagtccttgcgccgcagGTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGGCTGCCACTGGTGCCACTATCTAAACTGCGTGCCAACATCAAAGTGGAAG
tactgat putative branch site (score: 610)
tccttgc putative PPT
tttttttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaatccagttcggtatatttcctgtagacattttttatgtgtttaaacatatattgcagaaaatgttgctgcaaagattcgtgattctggactaatgctacattttatacgagcaactagtctaagatgttacatgttttttttttgaaaacgtggaatggtactgatgtcaaagtccttgcgccgcagGTTTGTGATTTCACTTGTGATGCTTTTCAAAGGGAAGAACGGGAACGACGGCTGCCACTGGTGCCACTATCTAAACTGCGTGCCAACATCAAAGTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG