Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactaagtaatattgtatcatatcttggcctgcatgacaggttttttctatcgcacaatgcatgggggctgtcttacccccgcaagtcaagtttttttttaaaaaatattgtatcatatgaacttgttttgttcctttattaaaaaatgatttgaccatatctgttctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTACCGGAAAAATGAGCTTGAGGAGAAAATGCTGTTGAACTTGCACAAAAAGA

Basic information

species Zea mays
transcript GRMZM2G033626_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033626_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g30800.1 (Oryza sativa), 3'ss of exon 4
gtaagtactaagtaatattgtatcatatcttggcctgcatgacaggttttttctatcgcacaatgcatgggggctgtcttacccccgcaagtcaagtttttttttaaaaaatattgtatcatatgaacttgttttgttcctttattaaaaaatgatttgaccatatctgttctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTACCGGAAAAATGAGCTTGAGGAGAAAATGCTGTTGAACTTGCACAAAAAGA
                                                                                      | ||||      |  | ||  |     || || ||||||   ||  ||| | |  ||| | |  ||||||  |    ||||| || ||| |||||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |  ||||||||||||||||||
--------------------------------------------------------------------------------------gtaagtgggtaataatgttggagc---ttcta-catatg--ttttctttttcctattacttatgaatgatcagg--gtatctcttttttgtcagGCTCTTATTCATGGGCTGAACAGGCACTACTATTCAATTGCAATCAATTACCGGAAAAATGAGCTTGAGGAAAAGATGTTACTGAACTTGCACAAAAAGA

upper sequence: GRMZM2G033626_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g16190.1 (Oryza sativa), 3'ss of exon 4
gtaagtactaagtaatattgtatcatatcttggcctgcatgacaggttttttctatcgcacaatgcatgggggctgtcttacccccgcaagtcaagtttttttt-taaaaaatattgtatcatatgaacttgttttgt-tcctttattaaaaaatgatttgaccatatctgttctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTACCGGAAAAATGAGCTTGAGGAGAAAATGCTGTTGAACTTGCACAAAAAGA
                                                                                          || ||||| |   | | || |||| ||   |  |||||||| |  | | ||  ||||  | |  |||||  | | ||| |||  | ||  |||||||||| || ||| |||| ||||||||||| || ||||||||||||||||| |||||||| || |||||||||||| || | ||||| ||||||||||
------------------------------------------------------------------------------------------gtaaagttctcactattaataatactgctaccaatgaacttttgctctatcaattatctatatttgattcaaacttatttgtgttgta--agGCTCTTATTCACGGGCTGAACAGACACTACTACTCCATTGCAATCAATTACCGCAAAAATGAACTGGAGGAGAAAATGTTGCTTAACTTACACAAAAAGA

upper sequence: GRMZM2G033626_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S46_324V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagtactaagtaatattgtatcatatcttggcctgcatgacaggttttttctatcgcacaatgcatgggggctgtcttacccccgcaagtcaagtttttttttaaaaaatattgtatcatatgaacttgttttgttcctttattaaaaaatgatttgaccatatctgttctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTACCGGAAAAATGAGCTTGAGGAGAAAATGCTGTTGAACTTGCACAAAAAGA
                                                                              |   | | |||    | |     | |  ||     ||| ||| ||  |  |   |   |     |  ||  ||   |  | |     | |  | |||  |||||| | |||||||| || ||  |||||||||||||||| | ||| ||||| ||||| ||||| || || ||||||||||| |||||| | ||||| ||||
-----------------------------------------------------------------------------ttcgacgctgcagaggatgcagaatgt--aagtgggttgcatcgtacta-ttctctagatattaatgatattaacctacattaatggttgtaatgtttcacagGCTTTAATCCATGGATTAAACCGACACTACTATTCAATCGGAATTAATTATCGGAAGAATGAACTAGAAGAGAAAATGCTTTTGAACCTTCACAAGAAGA

upper sequence: GRMZM2G033626_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S181_105V6.1 (Physcomitrella patens), 3'ss of exon 5
gtaagtactaagtaatattgtatcatatcttggcctgcatgacaggttttttctatcgcacaatgcatgggggctgtcttacccccgcaagtcaagtttttttttaaaaa-atattgtatcatatgaacttgttttgttcctttattaaaaaatgatttgaccat------atctgttctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTACCGGAAAAATGAGCTTGAGGAGAAAATGCTGTTGAACTTGCACAAAAAGA
                                                                                        |  |    |  | |   | |   | |    || |   | ||||||      | || |   ||   |||  |     |      |    |   || ||||||  | || ||||| |||||  | || ||||| ||||||| ||||||||||| ||| ||||| |||||||||||||||||  ||||| |||  || |  |
---------------------------------------------------------------------------------------tagattgtatcgtgtggcagaggcagagcagataacccggacttgtcaatcacattaacacaacgctgacctattttttgtgcgactcatatcttttcagGCATTAATTCATGGATTGAACCGCCATTACTACTCAATTGGAATCAATTACCAGAAGAATGAACTTGAGGAGAAAATGCTTCTGAACCTGCGTAAGAGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18384658|gb|BM417857.1|BM417857
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60396608|gb|DN229477.1|DN229477
EST:     ACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: ACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60350113|gb|DN217086.1|DN217086
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|16746066|gb|BM032496.1|BM032496
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|6020855|gb|AW065783.1|AW065783
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|18450549|gb|BM428827.1|BM428827
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTATATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|149096477|gb|EE182219.2|EE182219
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|149038835|gb|EE155548.2|EE155548
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCCATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|113701825|gb|EE679329.1|EE679329
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|5846875|gb|AI999958.1|AI999958
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|9255360|gb|BE345828.1|BE345828
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|6095407|gb|AW120074.1|AW120074
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60348469|gb|DN215442.1|DN215442
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|148947574|gb|EC893049.2|EC893049
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTA
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTA
EST: gi|211206384|gb|FL135241.1|FL135241
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|74245539|gb|DT653453.1|DT653453
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60359535|gb|DN226508.1|DN226508
EST:     TCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTTTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: TCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60351345|gb|DN218318.1|DN218318
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|71316540|gb|DR794944.1|DR794944
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GTTTTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|211418137|gb|FL144512.1|FL144512
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATA
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATA
EST: gi|5607653|gb|AI901320.1|AI901320
EST:     CACGTCAG-CAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|29576891|gb|CB617003.1|CB617003
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|18450550|gb|BM428828.1|BM428828
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|74245540|gb|DT653454.1|DT653454
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|19822747|gb|BQ048771.1|BQ048771
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60341661|gb|DN208634.1|DN208634
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60395954|gb|DN228824.1|DN228824
EST:     CAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|148937899|gb|EC882122.2|EC882122
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCCTGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60357174|gb|DN224147.1|DN224147
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|213179959|gb|FM185558.1|FM185558
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|211415598|gb|FL144507.1|FL144507
EST:     CACGTCAGACAACATCAAATGGTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTA
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTA
EST: gi|16745946|gb|BM032376.1|BM032376
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|211407939|gb|FL144461.1|FL144461
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTA
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTA
EST: gi|5847299|gb|AW000378.1|AW000378
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|28987642|gb|CB351736.1|CB351736
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|9255230|gb|BE345698.1|BE345698
EST:     ATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: ATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60354982|gb|DN221955.1|DN221955
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|18384562|gb|BM417761.1|BM417761
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGCTGAATAGACACTACTACTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|149038834|gb|EE155547.2|EE155547
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|60357641|gb|DN224614.1|DN224614
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|83278260|gb|DV942268.1|DV942268
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|148956392|gb|EC902209.2|EC902209
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
EST: gi|148956391|gb|EC902208.2|EC902208
EST:     CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAG                         GCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC
genomic: CACGTCAGACAACATCAAATGTTGGGCACCTAAATAAGCCATCTATTCAGgtaagtacta ... tctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttgttttgttcctttattaaaaaatgatttgaccatatctgttctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTACCGGAAAAATGAGCTTGAGGAGAAAATGCTGTTGAACTTGCACAAAAAGA
                             atttgac  putative branch site (score: 4)
                                        tctgttcttt  putative PPT
      ttttgttcctttatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtactaagtaatattgtatcatatcttggcctgcatgacaggttttttctatcgcacaatgcatgggggctgtcttacccccgcaagtcaagtttttttttaaaaaatattgtatcatatgaacttgttttgttcctttattaaaaaatgatttgaccatatctgttctttatcagGCTCTTATCCATGGGTTGAATAGACACTACTATTCAATTGCAATCAATTACCGGAAAAATGAGCTTGAGGAGAAAATGCTGTTGAACTTGCACAAAAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT