1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtgaaatgctataaaatatatcattgatgaattttatttattttcttatactataaccatcatttgtttctcaccacgatactttccctttgtttcaagGGTTTACTGAAGGAGGACTCAGATGGGTCTAAATTTTGGGCATATGGCGGCGACTTTGGAGATACTCCAAATGACTCCAATTTTTGCCTCAATGGCATTG
species | Zea mays |
transcript | GRMZM2G032496_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
cttatactataaccatcatttgtttctcaccacgatactttccctttgtttcaagGGTTTACTGAAGGAGGACTCAGATGGGTCTAAATTTTGGGCATATGGCGGCGACTTTGGAGATACTCCAAATGACTCCAATTTTTGCCTCAATGGCATTG
ttctcac putative branch site (score: 282)
tactttccctttgttt putative PPT
atttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgaaatgctataaaatatatcattgatgaattttatttattttcttatactataaccatcatttgtttctcaccacgatactttccctttgtttcaagGGTTTACTGAAGGAGGACTCAGATGGGTCTAAATTTTGGGCATATGGCGGCGACTTTGGAGATACTCCAAATGACTCCAATTTTTGCCTCAATGGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- tgaaatg
- - - - - - - - - - - - -tgatgaa