1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtatatccgatttttctctgttataacacctacttctatttgtatctcttgtcacttcaaacttcttgtaggcatatagtgttaacccatcagattggttgtttgtgcagAGTGTGTAGTTGGACAAGGAGGCACTAGTCAAGTTTACAGAGGCTGTTTGGCAAATGGCAAGGAGCTAGCAGTGAAGATCCTGAAGTATTCTGATGAGGT
species | Zea mays |
transcript | GRMZM2G032337_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATTCAGTTACAGTGAACTTGCAAAGATCACCTCTGACTTCTCACCAG AGTGTGTAGTTGGACAAGGAGGCACTAGTCAAGTTTACAGAGGCTGTTTGGEST: gi|211012472|gb|FL435058.1|FL435058
genomic: TTCATTCAGTTACAGTGAACTTGCAAAGATCACCTCTGACTTCTCACCAGgtatgtatat ... gtttgtgcagAGTGTGTAGTTGGACAAGGAGGCACTAGTCAAGTTTACAGAGGCTGTTTGG
EST: TTCATTCAGTTACAGTGAACTTGCAAAGATCACCTCTGACTTCTCACCAG AGTGTGTAGTTGGACAAGGAGGCACTAGTCAAGTTTACAGAGGCTGTTTGGEST: gi|101400926|gb|EB822148.1|EB822148
genomic: TTCATTCAGTTACAGTGAACTTGCAAAGATCACCTCTGACTTCTCACCAGgtatgtatat ... gtttgtgcagAGTGTGTAGTTGGACAAGGAGGCACTAGTCAAGTTTACAGAGGCTGTTTGG
EST: TTCATTCAGTTACAGTGAACTTGCAAAGATCACCTCTGACTTCTCACCAG AGTGTGTAGTTGGACAAGGAGGCACTAGTCAAGTTTACAGAGGCTGTTTGG
genomic: TTCATTCAGTTACAGTGAACTTGCAAAGATCACCTCTGACTTCTCACCAGgtatgtatat ... gtttgtgcagAGTGTGTAGTTGGACAAGGAGGCACTAGTCAAGTTTACAGAGGCTGTTTGG
ttcaaacttcttgtaggcatatagtgttaacccatcagattggttgtttgtgcagAGTGTGTAGTTGGACAAGGAGGCACTAGTCAAGTTTACAGAGGCTGTTTGGCAAATGGCAAGGAGCTAGCAGTGAAGATCCTGAAGTATTCTGATGAGGT
tgttaac putative branch site (score: 2)
atatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatatccgatttttctctgttataacacctacttctatttgtatctcttgtcacttcaaacttcttgtaggcatatagtgttaacccatcagattggttgtttgtgcagAGTGTGTAGTTGGACAAGGAGGCACTAGTCAAGTTTACAGAGGCTGTTTGGCAAATGGCAAGGAGCTAGCAGTGAAGATCCTGAAGTATTCTGATGAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG