Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaccgcaattcatctgctactaactttttctcttggtgttgattcaagttttgaatgaagttttatgcctccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA

Basic information

species Zea mays
transcript GRMZM2G031308_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031308_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g53520.1 (Oryza sativa), 3'ss of exon 4
gtaatgaccgcaattcatctgctactaactttttctcttggtgttgattcaagttttgaatgaagttttat--gcctccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA
|||||||   || | |  |      ||| |||  |      | ||||| |||||||  ||  |  |||| |  |     | | |||| |||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  || |||| | |||||||| ||
gtaatgataccagtgctgcgaagcttaagtttggcaaactat-ttgatacaagtttataacaacctttttttggggctgaatgcagTTTTTGTGGCGCTCTACACTGTGCCAGTACTGTATGAGAAGTATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTGAGATTGAATTTAAGAAGTACTA

upper sequence: GRMZM2G031308_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA20G30340.1 (Glycine max), 3'ss of exon 4
--------------gtaatgaccgcaattcatctgctactaactttttctcttggtgt-tgattcaagttttg----aatgaagtttta-------tgcctccattt---------cagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA
               | ||  |  | |||| |    |  | || | |  |  || | | |||||  |    |     ||||   ||||        ||  |||||||         ||||||||||| |||||| |||  | ||| | ||||||||||||||||| ||| |||||||||| || ||||||||||| |||| |||  | || ||| | ||
gtaagacttcatgcatcattgctcccattctttccattgttacgtgtctttatgttctatgattagaaggctatattaatggtattttcctaacactgaatccatttgggatgatacagTCTTTGTGTCACTGTTCACATTGCCACTGCTGTATGAGAAATATGAAGACCAGGTTGATGCATTAGGTGAGAAGGCAATGATTGAGATCAAAAAGCAGTA

upper sequence: GRMZM2G031308_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G37400.1 (Glycine max), 3'ss of exon 4
-------------gtaatgaccgcaattcatctgctactaactttttctcttggtgttgattcaagt----tttgaatgaagtttta-------tgcctccattt---------cagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA
              || |     || |   ||   |  ||  | | | | |      | ||| ||      ||| ||||   ||||        ||  |||||||         |||| |||||| |||||| |||  | ||| | ||||||||||||||||| ||| | |||||||| || || |||||||| |||| |||| | || ||| | ||
gtaagaaatgcatatattacttccattctttccattgttacgtgtctttatgttctataattaaaaggctattttaatggtattttcctaacattgaatccatttggggtgatacagTTTTTGTGTCACTGTTCACGTTGCCACTGCTGTATGAGAAATATGAAGACCAAGTTGATGCATTAGGAGAGAAGGCAATGATTGAAATCAAAAAGCAGTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211304744|gb|FL369602.1|FL369602
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCRCTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|60354473|gb|DN221446.1|DN221446
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|22819201|gb|BU499291.1|BU499291
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACCCTGTTCTATATTG                         TCTTTGTGGCCCTGTACCCTGTACCCGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|60340794|gb|DN207767.1|DN207767
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|18161888|gb|BM331727.1|BM331727
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|166443826|gb|EG125230.1|EG125230
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCAC
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCAC
EST: gi|60343056|gb|DN210029.1|DN210029
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|20803130|gb|BQ294180.1|BQ294180
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACCCTGTTCTATATTG                         TCTTTGTGGCCCTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|58029643|gb|CX725070.1|CX725070
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|211230553|gb|FL431915.1|FL431915
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|78543726|gb|DV621224.1|DV621224
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|12046292|gb|BF728431.1|BF728431
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|211110393|gb|FL429146.1|FL429146
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|5706244|gb|AI942020.1|AI942020
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|6671481|gb|AW282159.1|AW282159
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACCCTGTACCAGTGCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|37391641|gb|CF633064.1|CF633064
EST:     C-TTCAGTTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTCAG-TTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|60398300|gb|DN231116.1|DN231116
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|32846671|gb|CD986352.1|CD986352
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGT
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGT
EST: gi|211123058|gb|FL373668.1|FL373668
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|211230554|gb|FL431916.1|FL431916
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|4572761|gb|AI586410.1|AI586410
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|78180944|gb|DV551317.1|DV551317
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|211481757|gb|FL381851.1|FL381851
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTYTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|149108100|gb|EE292450.2|EE292450
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|78080520|gb|DV508932.1|DV508932
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|211220401|gb|FL437612.1|FL437612
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|76017609|gb|DT944779.1|DT944779
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|67024523|gb|CO453272.1|CO453272
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|30031873|gb|CB833724.1|CB833724
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|166631687|gb|EG281994.1|EG281994
EST:     GTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: GTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|148958760|gb|EC905039.2|EC905039
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|6918437|gb|AW399967.1|AW399967
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|8666034|gb|BE186850.1|BE186850
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACCCTGTTCTATATTG                         TCTTTGTGGCCCTGTACCCTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|111991211|gb|EE332402.1|EE332402
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|18181320|gb|BM382530.1|BM382530
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|22473080|gb|BU037560.1|BU037560
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|4646609|gb|AI491418.2|AI491418
EST:     GCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCNCTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: GCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|4827661|gb|AI668353.1|AI668353
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|149070242|gb|EE158642.2|EE158642
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|213168588|gb|FM186721.1|FM186721
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|38502736|gb|CF972596.1|CF972596
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
EST: gi|60397050|gb|DN229869.1|DN229869
EST:     TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA
genomic: TCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 337

GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 143

GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 130

GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 233

GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTGgtaatgaccg ... tccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctcttggtgttgattcaagttttgaatgaagttttatgcctccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA
            tgttgat  putative branch site (score: 233)
                                           cctccatttc  putative PPT
                                 aagttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgaccgcaattcatctgctactaactttttctcttggtgttgattcaagttttgaatgaagttttatgcctccatttcagTCTTTGTGGCACTGTACACTGTACCAGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGACTGAACTGAAGAAGTATTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT