1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcactgtccttccctgtaacaatagactttctatgtttttacctgtggtgcattgtgtcaccgaaaaacggatgagatggcatatgccatttatatcggacgcgatcttgaattcgccaaccgattttgttgttttttcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAAGATACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGAT
species | Zea mays |
transcript | GRMZM2G031204_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211132103|gb|FL293587.1|FL293587
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211132106|gb|FL293590.1|FL293590
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211133032|gb|FL293601.1|FL293601
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211133030|gb|FL293599.1|FL293599
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211133037|gb|FL293606.1|FL293606
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211240986|gb|FL293644.1|FL293644
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211236509|gb|FL293614.1|FL293614
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211133028|gb|FL293597.1|FL293597
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|23357637|gb|BU645286.1|BU645286
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211238739|gb|FL293623.1|FL293623
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGATATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211238747|gb|FL293631.1|FL293631
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211236504|gb|FL293609.1|FL293609
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211240992|gb|FL293650.1|FL293650
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|108952959|gb|EC364521.1|EC364521
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAEST: gi|211238746|gb|FL293630.1|FL293630
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
EST: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAATGGCCAAGTGATAAAAG GCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtcc ... tcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAA
atatcggacgcgatcttgaattcgccaaccgattttgttgttttttcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAAGATACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGAT
ttttgttgttttttc CT-rich tract
attttgttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactgtccttccctgtaacaatagactttctatgtttttacctgtggtgcattgtgtcaccgaaaaacggatgagatggcatatgccatttatatcggacgcgatcttgaattcgccaaccgattttgttgttttttcacctgtagGCTGGGACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAAGATACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA