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gttgtaaaataatgaagataacttttcattttctccatgcatgatattgcataataaattctgtgtatagttcaatctttaacttaaatccatatgcagctgccttatagtgcctaattcagattagttttctgattcactgcattattattctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG
species | Zea mays |
transcript | GRMZM2G030902_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|149104347|gb|EE289792.2|EE289792
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|31664299|gb|CD573024.1|CD573024
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAEST: gi|22545757|gb|BU098131.1|BU098131
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGA
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|71769697|gb|DR967634.1|DR967634
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|211345125|gb|FL007061.1|FL007061
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAA-G AATGTTCTTGATTGCGAEST: gi|148955713|gb|EC901400.2|EC901400
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGA
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|87156149|gb|DY400938.1|DY400938
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|149096474|gb|EE182216.2|EE182216
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|149000018|gb|EE037116.2|EE037116
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|211345131|gb|FL007067.1|FL007067
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGGCATGEST: gi|6564152|gb|AW231774.1|AW231774
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAG-CATG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCEST: gi|149104935|gb|EE290405.2|EE290405
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGC
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|26558833|gb|CA831068.1|CA831068
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|22473110|gb|BU037590.1|BU037590
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|71304925|gb|DR788593.1|DR788593
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|211345135|gb|FL007071.1|FL007071
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTTGGGAGCCGTACATEST: gi|31557986|gb|CD527198.1|CD527198
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTT-GGGAGCCGTACAT
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|211138007|gb|FL213712.1|FL213712
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|32919564|gb|CF024376.1|CF024376
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|149080743|gb|EE169805.2|EE169805
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|21432115|gb|BQ547605.1|BQ547605
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|9952229|gb|BE638812.1|BE638812
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGTGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|13558465|gb|BG549821.1|BG549821
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|60350487|gb|DN217460.1|DN217460
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
ttatagtgcctaattcagattagttttctgattcactgcattattattctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG
ttctgat putative branch site (score: 3)
ttattctttc putative PPT
attattattctttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtaaaataatgaagataacttttcattttctccatgcatgatattgcataataaattctgtgtatagttcaatctttaacttaaatccatatgcagctgccttatagtgcctaattcagattagttttctgattcactgcattattattctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA