1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtatacaacacagtttcagtttcttcacatccatatatgcttcagggttttcctaagtggtgatggtactgatcgcgtgcctgccactgtgcagCTTGGAGAGCTTAAAAGGCTATCGAGATCGATGAGGAAGCTTGCAAGAGAGCTGAGGGACACAGATAAATATGAG
species | Zea mays |
transcript | GRMZM2G029824_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATCCCTGTACTGCTGGATGGCTTCTTCTGCCTGTGCAGGTCTAGTTGAG CTTGGAGAGCTTAEST: gi|32824901|gb|CD964623.1|CD964623
genomic: TATCCCTGTACTGCTGGATGGCTTCTTCTGCCTGTGCAGGTCTAGTTGAGgtatgtatac ... cactgtgcagCTTGGAGAGCTTA
EST: TATCCCTGTACTGCTGGATGGCTTCTTCTGCCTGTGCAGGTCTAGTTGAG CTTGGAGAGCTTAEST: gi|76010688|gb|DT937858.1|DT937858
genomic: TATCCCTGTACTGCTGGATGGCTTCTTCTGCCTGTGCAGGTCTAGTTGAGgtatgtatac ... cactgtgcagCTTGGAGAGCTTA
EST: TATCCCTGTACTGCTGGATGGCTTCTTCTGCCTGTGCAGGTCTAGTTGAG CTTGGAGAGCTTAAAAGGCTATCGAGATCGATGAGGAAGCTTGCAAGAGAGEST: gi|32791123|gb|CD943359.1|CD943359
genomic: TATCCCTGTACTGCTGGATGGCTTCTTCTGCCTGTGCAGGTCTAGTTGAGgtatgtatac ... cactgtgcagCTTGGAGAGCTTAAAAGGCTATCGAGATCGATGAGGAAGCTTGCAAGAGAG
EST: TATCCCTGTACTGCTGGATGGCTTCTTCTGCCTGTGCAGGTCTAGTTGAG CTTGGAGAGCTTA
genomic: TATCCCTGTACTGCTGGATGGCTTCTTCTGCCTGTGCAGGTCTAGTTGAGgtatgtatac ... cactgtgcagCTTGGAGAGCTTA
cttcagggttttcctaagtggtgatggtactgatcgcgtgcctgccactgtgcagCTTGGAGAGCTTAAAAGGCTATCGAGATCGATGAGGAAGCTTGCAAGAGAGCTGAGGGACACAGATAAATATGAG
tactgat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatacaacacagtttcagtttcttcacatccatatatgcttcagggttttcctaagtggtgatggtactgatcgcgtgcctgccactgtgcagCTTGGAGAGCTTAAAAGGCTATCGAGATCGATGAGGAAGCTTGCAAGAGAGCTGAGGGACACAGATAAATATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA