1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgctttgctgcatgccattgtttactctacttttgttctcgttacttcattgatgtgacccagttgtaactaacttacaatgtacattttgtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCTGGAACCAATGTCATTAGGCCCAG
species | Zea mays |
transcript | GRMZM2G029566_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|71328229|gb|DR800748.1|DR800748
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|149044247|gb|EE047493.2|EE047493
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|149101399|gb|EE187518.2|EE187518
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148969714|gb|EE020586.2|EE020586
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|32851376|gb|CD991057.1|CD991057
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|211277944|gb|FK998813.1|FK998813
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGSAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATEST: gi|60348819|gb|DN215792.1|DN215792
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTAT
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148990772|gb|EE032185.2|EE032185
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148932701|gb|EC876670.2|EC876670
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148940815|gb|EC885642.2|EC885642
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148964333|gb|EC905725.2|EC905725
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|78124353|gb|DV542737.1|DV542737
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148956082|gb|EC901838.2|EC901838
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148955041|gb|EC900548.2|EC900548
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTTTTAGTTGTGTEST: gi|148983240|gb|EE029206.2|EE029206
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTAT-AGTTGTGT
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|149076833|gb|EE165488.2|EE165488
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|149042087|gb|EE047065.2|EE047065
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148949167|gb|EC894603.2|EC894603
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|71421618|gb|DR805518.1|DR805518
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148941367|gb|EC886277.2|EC886277
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148959990|gb|EE153229.2|EE153229
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|76920587|gb|DV168250.1|DV168250
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCTAGCATCATCTATAGTTGTGTCEST: gi|149009361|gb|EE041411.2|EE041411
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|148946154|gb|EC891448.2|EC891448
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCEST: gi|211272507|gb|FK998769.1|FK998769
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTTATCTTCCAGTAGGATACAATTGGGCGAGCATCATCTATAGTTGTGEST: gi|89764162|gb|DY691069.1|DY691069
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTT-ATCTTCCAGTAGGATACAAT-GGGCGAGCATCATCTATAGTTGTG
EST: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
ttcattgatgtgacccagttgtaactaacttacaatgtacattttgtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCTGGAACCAATGTCATTAGGCCCAG
ttttgtc CT-rich tract
tacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctttgctgcatgccattgtttactctacttttgttctcgttacttcattgatgtgacccagttgtaactaacttacaatgtacattttgtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCTGGAACCAATGTCATTAGGCCCAG
- - ttgctgc
- - - - - - tgccatt
- - - - - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - attgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacattt