1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatttaaatgttgcaacaattggtttgtttagtcttttgtttgcatttatttgattgagcaccgaattctgtcatctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTAT
species | Zea mays |
transcript | GRMZM2G029559_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|17921484|gb|BM259135.1|BM259135
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|15426721|gb|BI542543.1|BI542543
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|17921811|gb|BM259462.1|BM259462
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|56382464|gb|CV985133.1|CV985133
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|33100592|gb|CF060552.1|CF060552
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|211045448|gb|FL056741.1|FL056741
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|21987889|gb|BQ779417.1|BQ779417
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|32942861|gb|CF047680.1|CF047680
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|211045450|gb|FL056743.1|FL056743
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|30087596|gb|CB885802.1|CB885802
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|32908341|gb|CF013154.1|CF013154
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|211045447|gb|FL056740.1|FL056740
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|26456546|gb|CA828129.1|CA828129
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|211045445|gb|FL056738.1|FL056738
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTT-AGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|20301474|gb|BQ164417.1|BQ164417
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|211045441|gb|FL056734.1|FL056734
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|31406016|gb|CD484748.1|CD484748
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|74237946|gb|DT645860.1|DT645860
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|33093176|gb|CF053170.1|CF053170
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|31359821|gb|CD444178.1|CD444178
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|21331579|gb|BQ486960.1|BQ486960
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|548017|gb|T25217.1|T25217
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTEST: gi|211045444|gb|FL056737.1|FL056737
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
EST: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATG TTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
genomic: GGAGACACCTGATGGTCCTGTCTTTGAGAGCAATGCAATAGCAAGATATGgtaatttaaa ... ctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATT
agtcttttgtttgcatttatttgattgagcaccgaattctgtcatctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTAT
atttgat putative branch site (score: 254)
ttctgtcatctccct putative PPT
atttatttgattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttaaatgttgcaacaattggtttgtttagtcttttgtttgcatttatttgattgagcaccgaattctgtcatctccctgaagTTACTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG